Browse Element(s) Details


Os.51983.1.A1_x_at

Description gb:AK064461.1
DB_XREF= gi:32974479
TID=Os.51983.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51983 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-110-G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-110-G05, full insert sequence.
FL= gb:AK064461.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1247011/11Mitochondrial carrier protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12440Os.31908.1.S1_at11/111+6810536..6812336AP2 domain containing protein, expressed
LOC_Os01g12460Os.23618.1.S1_at11/111+6826906..6829572expressed protein
LOC_Os01g12470Os.51983.1.A1_x_at11/111+6833922..6838052Mitochondrial carrier protein, expressed
LOC_Os01g12480Os.12759.1.S1_at10/111+6838328..6840340expressed protein
LOC_Os01g12490Os.22585.1.S1_at11/111+6854024..6857754expressed protein
LOC_Os01g12500NANA1+6860123..6860549hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005215molecular_functiontransporter activity
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51983.1.A1_x_at--848--9291Chr01:6836696..6836720 (25 bp)
TCCGCAGGCTTCATTGCTGGAGTTA
LOC_Os01g12470
Os.51983.1.A1_x_at--395--8551Chr01:6836713..6836737 (25 bp)
TGGAGTTATCTCTGCTGGTGCTACC
LOC_Os01g12470
Os.51983.1.A1_x_at--45--7271Chr01:6836739..6836763 (25 bp)
GTCCTCTCGATGTTGCCAAGACACG
LOC_Os01g12470
Os.51983.1.A1_x_at--1112--4971Chr01:6837613..6837637 (25 bp)
GCATCGTCGTCTCGTCATATGAAGT
LOC_Os01g12470
Os.51983.1.A1_x_at--224--10031Chr01:6837700..6837724 (25 bp)
TAGAATTCAACTGCAGCTGAGGCTT
LOC_Os01g12470
Os.51983.1.A1_x_at--456--1191Chr01:6837743..6837767 (25 bp)
AGTTTACCCTACACGGACTAGATCG
LOC_Os01g12470
Os.51983.1.A1_x_at--658--111Chr01:6837789..6837813 (25 bp)
ATTCTCTATCTATATGCCTTGCCTA
LOC_Os01g12470
Os.51983.1.A1_x_at--603--591Chr01:6837802..6837826 (25 bp)
ATGCCTTGCCTACCTTATCAGGAAG
LOC_Os01g12470
Os.51983.1.A1_x_at--848--8411Chr01:6837831..6837855 (25 bp)
GGCCGAGTGTGTCCCTTCTAATAAA
LOC_Os01g12470
Os.51983.1.A1_x_at--1021--1471Chr01:6837894..6837918 (25 bp)
AGAATTCATTGATCCATTCTCCCTG
LOC_Os01g12470
Os.51983.1.A1_x_at--173--3591Chr01:6837908..6837932 (25 bp)
CATTCTCCCTGTCTGCTAAAAGTGA
LOC_Os01g12470
Target Sequence 
TCCGCAGGCTTCATTGCTGGAGTTATCTCTGCTGGTGCTACCTGTCCTCTCGATGTTGCCAAGACACGCAGACAAATAGA
GAAGGACCCAGCTAGGGTATTACACATGAACACAAGGCGCATATTGCATGAAGTATGGAGTAAGGAAGGCATCAGCGGNA
TATTCAGAGGTGCAGGTCCTCGANTGGCACGGGCAGGGCCTTCAGTGGGCATCGTCGTCTCGTCATATGAAGTTGTNAAG
CACATCATGCACCGGAAACACGCAGAGTTATGACCTGATTTTAACTCTTCAAACGTAGAATTCAACTGCAGCTGAGGCTT
TTAACCATTATTTTTTCTAGTTTACCCTACACGGACTAGATCGCTTTAGTGAAAGCCGGTTTTTATTCTCTATCTATATG
CCTTGCCTACCTTATCAGGAAGGTGAGGCCGAGTGTGTCCCTTCTAATAAAAGGGCAGAATGCCCTAGATGTGAACATTC
CTTGTTACAAGAATTCATTGATCCATTCTCCCTGTCTGCTAAAAGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51983.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis