Browse Element(s) Details


Os.31908.1.S1_at

Description gb:AK106517.1
DB_XREF= gi:32991726
TID=Os.31908.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31908 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-107-B02, full insert sequence.
FL= gb:AK106517.1 gb:AK101054.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1244011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12420Os.33112.1.S1_at11/111+6783896..6786532D-mannose binding lectin family protein, expressed
LOC_Os01g12420OsAffx.15066.1.S1_x_at1/111+6783896..6786532D-mannose binding lectin family protein, expressed
LOC_Os01g12430Os.24984.1.A1_at11/111+6787459..6790053D-mannose binding lectin family protein, expressed
LOC_Os01g12430OsAffx.15066.1.S1_x_at1/111+6787459..6790053D-mannose binding lectin family protein, expressed
LOC_Os01g12440Os.31908.1.S1_at11/111+6810536..6812336AP2 domain containing protein, expressed
LOC_Os01g12460Os.23618.1.S1_at11/111+6826906..6829572expressed protein
LOC_Os01g12470Os.51983.1.A1_x_at11/111+6833922..6838052Mitochondrial carrier protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0010105biological_processnegative regulation of ethylene mediated signaling pathway
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016564molecular_functiontranscriptional repressor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31908.1.S1_at--1106--3791Chr01:6811897..6811921 (25 bp)
CTCCAGCAACAATGGGTCACCGGAC
LOC_Os01g12440
Os.31908.1.S1_at--115--4711Chr01:6811949..6811973 (25 bp)
GCGGCGGCACAAGTGGACGACTTCT
LOC_Os01g12440
Os.31908.1.S1_at--134--7531Chr01:6811961..6811985 (25 bp)
GTGGACGACTTCTTCCAAGACATCA
LOC_Os01g12440
Os.31908.1.S1_at--83--9551Chr01:6811971..6811995 (25 bp)
TCTTCCAAGACATCACCGACCTGTT
LOC_Os01g12440
Os.31908.1.S1_at--216--1291Chr01:6811998..6812022 (25 bp)
AGATCCCCGTCGTCTAGTGCAGCAG
LOC_Os01g12440
Os.31908.1.S1_at--376--8731Chr01:6812030..6812054 (25 bp)
TGTAAAACACCGGATTAGGAGACTA
LOC_Os01g12440
Os.31908.1.S1_at--388--10091Chr01:6812045..6812069 (25 bp)
TAGGAGACTAATCCGGCCCAATTTT
LOC_Os01g12440
Os.31908.1.S1_at--1075--4511Chr01:6812060..6812084 (25 bp)
GCCCAATTTTGTTTGCGTTTTCTCT
LOC_Os01g12440
Os.31908.1.S1_at--249--1351Chr01:6812125..6812149 (25 bp)
AGAGTTGAGTTAATGATTCCCCGTC
LOC_Os01g12440
Os.31908.1.S1_at--410--6071Chr01:6812131..6812155 (25 bp)
GAGTTAATGATTCCCCGTCAGTCTA
LOC_Os01g12440
Os.31908.1.S1_at--255--4251Chr01:6812145..6812169 (25 bp)
CCGTCAGTCTAGCTGCGGCAGAACA
LOC_Os01g12440
Target Sequence 
CTCCAGCAACAATGGGTCACCGGACCTCCACCTCGACGACGCCCCATCGCCGGCGGCGGCACAAGTGGACGACTTCTTCC
AAGACATCACCGACCTGTTCCAGATCCCCGTCGTCTAGTGCAGCAGCAANAACNNNTGTAAAACACCGGATTAGGAGACT
AATCCGGCCCAATTTTGTTTGCGTTTTCTCTTTTTTTTTTTCTTCTTTATTTTTTCGTTTTTAGAGGAGAGGAGAGTTGA
GTTAATGATTCCCCGTCAGTCTAGCTGCGGCAGAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31908.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis