Browse Element(s) Details


Os.24984.1.A1_at

Description gb:CA763234
DB_XREF= gi:25807273
DB_XREF=BR060004A20C11.ab1
CLONE=BR060004A20C11.ab1
TID=Os.24984.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.24984 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1243011/11D-mannose binding lectin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12390Os.28972.1.S1_at11/111+6763301..6766915leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g12400Os.27052.1.S1_at11/111+6771004..6777139Protein kinase domain containing protein, expressed
LOC_Os01g12410NANA1+6778721..6781009D-mannose binding lectin family protein
LOC_Os01g12420Os.33112.1.S1_at11/111+6783896..6786532D-mannose binding lectin family protein, expressed
LOC_Os01g12420OsAffx.15066.1.S1_x_at1/111+6783896..6786532D-mannose binding lectin family protein, expressed
LOC_Os01g12430Os.24984.1.A1_at11/111+6787459..6790053D-mannose binding lectin family protein, expressed
LOC_Os01g12430OsAffx.15066.1.S1_x_at1/111+6787459..6790053D-mannose binding lectin family protein, expressed
LOC_Os01g12440Os.31908.1.S1_at11/111+6810536..6812336AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24984.1.A1_at--224--5311Chr01:6787897..6787921 (25 bp)
GAAGGAGCTTGACATCACCTGTAGA
LOC_Os01g12430
Os.24984.1.A1_at--653--391Chr01:6787884..6787908 (25 bp)
ATCACCTGTAGAGTGGCCTGTTGGT
LOC_Os01g12430
Os.24984.1.A1_at--1108--251Chr01:6787790..6787814 (25 bp)
ATATGGAGATGCCACCAATTCCAGC
LOC_Os01g12430
Os.24984.1.A1_at--187--4911Chr01:6787767..6787791 (25 bp)
GCTTCATTTCAGAACCTCATGGAGA
LOC_Os01g12430
Os.24984.1.A1_at--63--2331Chr01:6787715..6787739 (25 bp)
AAAGCTGGAATTTCAGGACCCGAGA
LOC_Os01g12430
Os.24984.1.A1_at--401--951Chr01:6787701..6787725 (25 bp)
AGGACCCGAGATCAGTTCTAGCTTC
LOC_Os01g12430
Os.24984.1.A1_at--648--10651Chr01:6787679..6787703 (25 bp)
TTCCCCTCCAGTTTCTCAGAATGAT
LOC_Os01g12430
Os.24984.1.A1_at--1001--1451Chr01:6787662..6787686 (25 bp)
AGAATGATACTCTCGGTTTCTCCGT
LOC_Os01g12430
Os.24984.1.A1_at--66--10591Chr01:6787645..6787669 (25 bp)
TTCTCCGTGGACCTGCTTGGTGTGA
LOC_Os01g12430
Os.24984.1.A1_at--685--7191Chr01:6787612..6787635 (24 bp)
GTCGGTTAGAATTTAGGCATGCACA
LOC_Os01g12430
Os.24984.1.A1_at--57--5131Chr01:6787491..6787515 (25 bp)
GCACAAACTGTATGTTCTAGCTGTA
LOC_Os01g12430
Target Sequence 
GAAGGAGCTTGACATCACCTGTAGAGTGGCCTGTTGGTGCATCCAGGATGAAGAGAATGACAGACCGTCGATGGGGCAAG
TCGTTCGCATGTTGGAAGGCGTTGTCGATATGGAGATGCCACCAATTCCAGCTTCATTTCAGAACCTCATGGAGAGTGAA
GACAGTGGTATATACTCTGAAGAAAGCTGGAATTTCAGGACCCGAGATCAGTTCTAGCTTCCCCTCCAGTTTCTCAGAAT
GATACTCTCGGTTTCTCCGTGGACCTGCTTGGTGTGAGCAGGGGGGTCGGTTAGAATTTAGGCATGCACAAACTAGTTTT
TCAGCAGTGAATTTAGGCAGGTGTAAAGTAGTATGTCAGTGGAATGATCAGTAGAGTCAGTGCATTAATCAGTAGAAACT
AGACATGCACAAACTGTATGTTCTAGCTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24984.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis