Browse Element(s) Details


Os.27052.1.S1_at

Description gb:AK067417.1
DB_XREF= gi:32977435
TID=Os.27052.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27052 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013099D24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013099D24, full insert sequence.
FL= gb:AK067417.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1240011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12350Os.31312.2.S1_x_at2/111+6744278..6747530retrotransposon protein, putative, unclassified
LOC_Os01g12350Os.31312.5.S1_x_at2/111+6744278..6747530retrotransposon protein, putative, unclassified
LOC_Os01g12360OsAffx.22492.1.S1_x_at1/111+6748159..6754314retrotransposon protein, putative, unclassified, expressed
LOC_Os01g12360OsAffx.22492.1.S1_at1/111+6748159..6754314retrotransposon protein, putative, unclassified, expressed
LOC_Os01g12374OsAffx.22233.2.S1_x_at7/111+6755777..6760669expressed protein
LOC_Os01g12374OsAffx.22233.5.S1_x_at3/111+6755777..6760669expressed protein
LOC_Os01g12390Os.28972.1.S1_at11/111+6763301..6766915leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g12400Os.27052.1.S1_at11/111+6771004..6777139Protein kinase domain containing protein, expressed
LOC_Os01g12410NANA1+6778721..6781009D-mannose binding lectin family protein
LOC_Os01g12420Os.33112.1.S1_at11/111+6783896..6786532D-mannose binding lectin family protein, expressed
LOC_Os01g12420OsAffx.15066.1.S1_x_at1/111+6783896..6786532D-mannose binding lectin family protein, expressed
LOC_Os01g12430Os.24984.1.A1_at11/111+6787459..6790053D-mannose binding lectin family protein, expressed
LOC_Os01g12430OsAffx.15066.1.S1_x_at1/111+6787459..6790053D-mannose binding lectin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27052.1.S1_at--889--9451Chr01:6771575..6771599 (25 bp)
TCTGGACAGCCTATTACCTACAAGG
LOC_Os01g12400
Os.27052.1.S1_at--293--10471Chr01:6771562..6771586 (25 bp)
TTACCTACAAGGCAGACGTCTATAG
LOC_Os01g12400
Os.27052.1.S1_at--464--10851Chr01:6771535..6771559 (25 bp)
TTGGTGTCCTGCTCTTCGAAATAAT
LOC_Os01g12400
Os.27052.1.S1_at--647--10431Chr01:6771453..6771477 (25 bp)
TTATGCTGCTGCTAAAGTGAACGAA
LOC_Os01g12400
Os.27052.1.S1_at--575--731Chr01:6771367..6771391 (25 bp)
ATGTTGCCTGCCGAGTTGCTTGTTG
LOC_Os01g12400
Os.27052.1.S1_at--53--711Chr01:6771328..6771352 (25 bp)
ATGAGATCCACAGGCCATCAATGAG
LOC_Os01g12400
Os.27052.1.S1_at--505--10231Chr01:6771279..6771303 (25 bp)
TATTGTCGGCGTTGAATTGCCTCCT
LOC_Os01g12400
Os.27052.1.S1_at--203--4211Chr01:6771251..6771275 (25 bp)
CCGGCTTCCTTTCAAAACCTGATGG
LOC_Os01g12400
Os.27052.1.S1_at--446--10231Chr01:6771158..6771182 (25 bp)
TATTGCGTGTTTCTTGACCTTGATC
LOC_Os01g12400
Os.27052.1.S1_at--493--6411Chr01:6771137..6771161 (25 bp)
GATCTGTATCACTCTATTCTATTTG
LOC_Os01g12400
Os.27052.1.S1_at--151--6971Chr01:6771093..6771117 (25 bp)
GTAGCTGTCTTTGAACTCTGTTTAG
LOC_Os01g12400
Target Sequence 
TCTGGACAGCCTATTACCTACAAGGCAGACGTCTATAGTTTTGGTGTCCTGCTCTTCGAAATAATATCAGGGCGGAGGAG
TACGGAGAAAATTCAACATGGAAACCATCGATATTTCCCCCTTTATGCTGCTGCTAAAGTGAACGAAGGAGATGTTTTAT
GCTTGCTTGATGACANGGCTGGAAGGAAATGCGAGTTTGAAGGAGCTGGATGTTGCCTGCCGAGTTGCTTGTTGGTGCAT
CCAGGATGATGAGATCCACAGGCCATCAATGAGGCAAGTTATTCACATGTTGGAAGGTATTGTCGGCGTTGAATTGCCTC
CTATCCCGGCTTCCTTTCAAAACCTGATGGACGGTTATGATAGTGATTTATATTCTGTGGAAGTTTGATATNGGATCTCT
TCANGTTGCTAGTAGTTTTTATTGCGTGTTTCTTGACCTTGATCTGTATCACTCTATTCTATTTGTTTTGTAGTATTCGG
CTATGTAGCTGTCTTTGAACTCTGTTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27052.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis