Browse Element(s) Details


Os.33112.1.S1_at

Description gb:AK101712.1
DB_XREF= gi:32986921
TID=Os.33112.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33112 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033060M08, full insert sequence.
FL= gb:AK101712.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1242011/11D-mannose binding lectin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12374OsAffx.22233.2.S1_x_at7/111+6755777..6760669expressed protein
LOC_Os01g12374OsAffx.22233.5.S1_x_at3/111+6755777..6760669expressed protein
LOC_Os01g12390Os.28972.1.S1_at11/111+6763301..6766915leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g12400Os.27052.1.S1_at11/111+6771004..6777139Protein kinase domain containing protein, expressed
LOC_Os01g12410NANA1+6778721..6781009D-mannose binding lectin family protein
LOC_Os01g12420Os.33112.1.S1_at11/111+6783896..6786532D-mannose binding lectin family protein, expressed
LOC_Os01g12420OsAffx.15066.1.S1_x_at1/111+6783896..6786532D-mannose binding lectin family protein, expressed
LOC_Os01g12430Os.24984.1.A1_at11/111+6787459..6790053D-mannose binding lectin family protein, expressed
LOC_Os01g12430OsAffx.15066.1.S1_x_at1/111+6787459..6790053D-mannose binding lectin family protein, expressed
LOC_Os01g12440Os.31908.1.S1_at11/111+6810536..6812336AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33112.1.S1_at--335--671Chr01:6786065..6786089 (25 bp)
ATGAAATTCGGGAGCCATCGGTATT
LOC_Os01g12420
Os.33112.1.S1_at--494--1571Chr01:6786095..6786119 (25 bp)
AGCTACGCGGCTGCGCAAATGCATG
LOC_Os01g12420
Os.33112.1.S1_at--1105--971Chr01:6786121..6786145 (25 bp)
AGGAGATGTTCTGTGCTTGCTGGAC
LOC_Os01g12420
Os.33112.1.S1_at--280--5911Chr01:6786176..6786200 (25 bp)
GAGCTCGACATCACCTGCAGAGTCG
LOC_Os01g12420
Os.33112.1.S1_at--1123--5031Chr01:6786192..6786216 (25 bp)
GCAGAGTCGCCTGCTGGTGCATCCA
LOC_Os01g12420
Os.33112.1.S1_at--31--2151Chr01:6786219..6786243 (25 bp)
ACAGAGAGGGTGACAGGCCATCGAT
LOC_Os01g12420
Os.33112.1.S1_at--379--91Chr01:6786296..6786320 (25 bp)
ATTCCAGCTTCGTTTCAGAACCTTG
LOC_Os01g12420
Os.33112.1.S1_at--573--2351Chr01:6786352..6786376 (25 bp)
AAACTGGCGTTTGAGGACCCAAGAT
LOC_Os01g12420
Os.33112.1.S1_at--33--5811Chr01:6786367..6786391 (25 bp)
GACCCAAGATTAGTGCCAGTTTCCC
LOC_Os01g12420
Os.33112.1.S1_at--708--7871Chr01:6786420..6786444 (25 bp)
GGTTTCTTGCTGGACCTATTTGATT
LOC_Os01g12420
Os.33112.1.S1_at--99--5491Chr01:6786483..6786507 (25 bp)
GAACTTGTATGTTGCAGTACCTGTA
LOC_Os01g12420
Target Sequence 
ATGAAATTCGGGAGCCATCGGTATTACCCCAGCTACGCGGCTGCGCAAATGCATGAAGGAGATGTTCTGTGCTTGCTGGA
CAGTAGGCTGGAAGGAAATGCCAATGTGGAGGAGCTCGACATCACCTGCAGAGTCGCCTGCTGGTGCATCCAGGACAGAG
AGGGTGACAGGCCATCGATGGGGCACGTCGTTCGCATGTTGGAAGGTGTTGTGGACACGGAGATGCCCCCAATTCCAGCT
TCGTTTCAGAACCTTGTGGATGGTGATGACAGTGATATATACGAAGAAAACTGGCGTTTGAGGACCCAAGATTAGTGCCA
GTTTCCCTTCCTGTTTTCAAAGGGAGAAGTATATTGGTTTCTTGCTGGACCTATTTGATTTCAGCAGATTGATCAGTCAA
TAGAAATTAGACATGTATGAACTTGTATGTTGCAGTACCTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33112.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis