Browse Element(s) Details


Os.7560.1.S1_at

Description gb:AK103667.1
DB_XREF= gi:32988876
TID=Os.7560.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.7560 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033135K13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033135K13, full insert sequence.
FL= gb:AK103667.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1991011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19860OsAffx.29313.1.S1_at1/119+11885659..11888103transposon protein, putative, Mutator sub-class
LOC_Os09g19870Os.56216.1.S1_at7/119+11891671..11892888hypothetical protein
LOC_Os09g19880OsAffx.29930.1.S1_at10/119+11895013..11901545hypothetical protein
LOC_Os09g19890Os.7809.1.S1_at11/119+11903358..11907118expressed protein
LOC_Os09g19900Os.18123.1.S1_at11/119+11908066..11911723transducin family protein, putative, expressed
LOC_Os09g19910Os.7560.1.S1_at11/119+11912657..11915279expressed protein
LOC_Os09g19920OsAffx.29931.1.S1_at11/119+11915673..11919094expressed protein
LOC_Os09g19930Os.9782.1.S1_at11/119+11919532..11925038HOTHEAD protein precursor, putative, expressed
LOC_Os09g19930Os.23618.1.S1_at1/119+11919532..11925038HOTHEAD protein precursor, putative, expressed
LOC_Os09g19940Os.49315.1.S1_at11/119+11933598..11939112CwfJ-like family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7560.1.S1_at--603--1311Chr09:11914303..11914327 (25 bp)
AGATGGAGCACAATTCCAGTCCCCA
LOC_Os09g19910
Os.7560.1.S1_at--342--1151Chr09:11914289..11914310 (22 bp)
AGTCCCCATGGAAATAATGCTGACC
LOC_Os09g19910
Os.7560.1.S1_at--821--9111Chr09:11913181..11913201 (21 bp)
TGCTGACCTGCATAAGGACTCAAAG
LOC_Os09g19910
Os.7560.1.S1_at--206--7271Chr09:11913053..11913077 (25 bp)
GTCCAAATGTGTTTGAGCGTGCCAA
LOC_Os09g19910
Os.7560.1.S1_at--261--2711Chr09:11913017..11913041 (25 bp)
AAGCTATTGTTGAAGCCTTCCACCC
LOC_Os09g19910
Os.7560.1.S1_at--263--1311Chr09:11912964..11912988 (25 bp)
AGATGTTCTGTTGCCTCTGTCTGCA
LOC_Os09g19910
Os.7560.1.S1_at--11--10711Chr09:11912954..11912978 (25 bp)
TTGCCTCTGTCTGCACTTGATGTGA
LOC_Os09g19910
Os.7560.1.S1_at--672--6051Chr09:11912894..11912918 (25 bp)
GAGTTGTGAGATATCCATCGGCTGG
LOC_Os09g19910
Os.7560.1.S1_at--1100--471Chr09:11912878..11912902 (25 bp)
ATCGGCTGGTCTTATTATTGCCAAA
LOC_Os09g19910
Os.7560.1.S1_at--946--6651Chr09:11912737..11912761 (25 bp)
GTTGAACTTAGTCCTTTGCATGATA
LOC_Os09g19910
Os.7560.1.S1_at--179--7871Chr09:11912711..11912735 (25 bp)
GGTATTTTACTTGCTACCATACATG
LOC_Os09g19910
Target Sequence 
AGATGGAGCACAATTCCAGTCCCCATGGAAATAATGCTGACCTGCATAAGGACTCAAAGGATGAAAGCAAGGTGTCAATG
AACAAAATAGAGACCCACAAGAATGAAACTCATGGTACAAGCGATGATATAAATGAGAATACACCAGTTGAGAGAGTTAA
AGGTCCAAATGTGTTTGAGCGTGCCAAGGAAGAGATTGAAGCTATTGTTGAAGCCTTCCACCCNAAGAAGGGATCTGACA
AGTGAAGATTGAGATGTTCTGTTGCCTCTGTCTGCACTTGATGTGAAAACATTGACATGAGTTATTAATAGATCCATGGA
TGAGTTGTGAGATATCCATCGGCTGGTCTTATTATTGCCAAACTATGGAGTTGTAACTGTTGAATGGTTCATTGTACCAC
TGATATATATATGAGCAGAGTGTGTATCATGTGTGACATGAAAGTATTACTGTTCTTCAGTGTTTGNTTTTAGTGTATGT
TGAACTTAGTCCTTTGCATGATATGGTATTTTACTTGCTACCATACATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7560.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis