Browse Element(s) Details


OsAffx.29931.1.S1_at

Description tigr:9637.m01689
TID=OsAffx.29931.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to hydrolase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1992011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19870Os.56216.1.S1_at7/119+11891671..11892888hypothetical protein
LOC_Os09g19880OsAffx.29930.1.S1_at10/119+11895013..11901545hypothetical protein
LOC_Os09g19890Os.7809.1.S1_at11/119+11903358..11907118expressed protein
LOC_Os09g19900Os.18123.1.S1_at11/119+11908066..11911723transducin family protein, putative, expressed
LOC_Os09g19910Os.7560.1.S1_at11/119+11912657..11915279expressed protein
LOC_Os09g19920OsAffx.29931.1.S1_at11/119+11915673..11919094expressed protein
LOC_Os09g19930Os.9782.1.S1_at11/119+11919532..11925038HOTHEAD protein precursor, putative, expressed
LOC_Os09g19930Os.23618.1.S1_at1/119+11919532..11925038HOTHEAD protein precursor, putative, expressed
LOC_Os09g19940Os.49315.1.S1_at11/119+11933598..11939112CwfJ-like family protein, putative, expressed
LOC_Os09g19950Os.53182.1.S1_at11/119+11941964..11943252expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29931.1.S1_at--236--1431Chr09:11916796..11916820 (25 bp)
AGAACTCCTTTGGTACAGGCCTTGA
LOC_Os09g19920
OsAffx.29931.1.S1_at--697--871Chr09:11916812..11916836 (25 bp)
AGGCCTTGATTGTCTTCGCGATTGG
LOC_Os09g19920
OsAffx.29931.1.S1_at--675--4351Chr09:11916853..11916877 (25 bp)
CCACCATCCCGATTTATGTAGCAGA
LOC_Os09g19920
OsAffx.29931.1.S1_at--1046--7871Chr09:11917124..11917148 (25 bp)
GGTTATACCTGGAGCTGCAGTTTCA
LOC_Os09g19920
OsAffx.29931.1.S1_at--80--6211Chr09:11917548..11917567 (20 bp)
GAGGCAGACACCTGTGACCATCGAT
LOC_Os09g19920
OsAffx.29931.1.S1_at--806--351Chr09:11917740..11917761 (22 bp)
ATAAGGTCATTCCTTTGCCTGTCTG
LOC_Os09g19920
OsAffx.29931.1.S1_at--1014--8711Chr09:11917756..11917780 (25 bp)
TGTCTGGCATGGTCAGGGTTACCGC
LOC_Os09g19920
OsAffx.29931.1.S1_at--1116--9951Chr09:11917775..11917799 (25 bp)
TACCGCTCTCTTGGTTTTCGTTTTG
LOC_Os09g19920
OsAffx.29931.1.S1_at--226--10611Chr09:11917791..11917815 (25 bp)
TTCGTTTTGGTCGTGTATGCTACAT
LOC_Os09g19920
OsAffx.29931.1.S1_at--852--2911Chr09:11918129..11918152 (24 bp)
AAGGATGCTCTTAGACCCGATCGTT
LOC_Os09g19920
OsAffx.29931.1.S1_at--499--9951Chr09:11918174..11918285 (25 bp)
TACCACGGGCCCTTGAGGAAGTTAG
LOC_Os09g19920
Target Sequence 
AGAACTCCTTTGGTACAGGCCTTGATTGTCTTCGCGATTGGACGAACAATGTCCAGCCCACCATCCCGATTTATGTAGCA
GAACGTGATTATGAGGTGATGAAGATGACTCACTACTATTTGATTGACACAAGTGTGGTTATACCTGGAGCTGCAGTTTC
AGCATTGCAATTCAACATTATTAAAGAGGAACCATTTACAGTTCATAACCTTGAGGCAGACACCTGTGACCATCGATTTG
TTGGCCAAAAGTATGTAAACTATAAGGTCATTCCTTTGCCTGTCTGGCATGGTCAGGGTTACCGCTCTCTTGGTTTTCGT
TTTGGTCGTGTATGCTACATAAGGATGCTCTTAGACCCGATCGTTCTTCTTCAACACACTTTGGATTACCACGGGCCCTT
GAGGAAGTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29931.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis