Browse Element(s) Details


Os.10390.1.S1_at

Description gb:AK103002.1
DB_XREF= gi:32988211
TID=Os.10390.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10390 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033116G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033116G06, full insert sequence.
FL= gb:AK103002.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5543011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55389Os.1175.1.S1_at10/113+31447755..31453402Casein kinase II, alpha chain 1, putative, expressed
LOC_Os03g55389Os.28405.1.S1_x_at5/113+31447755..31453402Casein kinase II, alpha chain 1, putative, expressed
LOC_Os03g55400Os.55702.1.S1_at11/113+31456300..31457825expressed protein
LOC_Os03g55410Os.32471.1.S1_at11/113+31465668..31467190Peroxidase 51 precursor, putative, expressed
LOC_Os03g55420Os.11548.1.S1_at11/113+31469757..31472467Peroxidase 35 precursor, putative, expressed
LOC_Os03g55430Os.10390.1.S1_at11/113+31476797..31477784expressed protein
LOC_Os03g55440OsAffx.25719.1.S1_at11/113+31478415..31480076hypothetical protein
LOC_Os03g55450Os.17749.1.A1_at11/113+31481890..31483415expressed protein
LOC_Os03g55450Os.17749.2.S1_at10/113+31481890..31483415expressed protein
LOC_Os03g55460OsAffx.25720.1.S1_at11/113+31487190..31489692expressed protein
LOC_Os03g55470Os.13860.1.A1_at10/113+31492862..31497250expressed protein
LOC_Os03g55480NANA3+31501649..31502474hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10390.1.S1_at--877--9531Chr03:31477258..31477282 (25 bp)
TCTACTACTGCTGCGCGTTCTAATT
LOC_Os03g55430
Os.10390.1.S1_at--947--4551Chr03:31477270..31477294 (25 bp)
GCGCGTTCTAATTAGCCTCAGGGAT
LOC_Os03g55430
Os.10390.1.S1_at--820--1971Chr03:31477324..31477348 (25 bp)
ACTGCTCGATCGGTTGCTTTCTGGC
LOC_Os03g55430
Os.10390.1.S1_at--17--7431Chr03:31477419..31477443 (25 bp)
GTGTTCTTGATTCGAGGCTGTCCCG
LOC_Os03g55430
Os.10390.1.S1_at--193--8351Chr03:31477434..31477458 (25 bp)
GGCTGTCCCGGCGAAGTTTTGCTGA
LOC_Os03g55430
Os.10390.1.S1_at--558--1211Chr03:31477448..31477472 (25 bp)
AGTTTTGCTGAGACCAATCGTCCCG
LOC_Os03g55430
Os.10390.1.S1_at--983--5551Chr03:31477457..31477481 (25 bp)
GAGACCAATCGTCCCGGCAAAAGAG
LOC_Os03g55430
Os.10390.1.S1_at--1160--2551Chr03:31477556..31477580 (25 bp)
AACGATGATCACGATCTCGAGTCGA
LOC_Os03g55430
Os.10390.1.S1_at--748--1451Chr03:31477690..31477714 (25 bp)
AGAAGAGATCTTCCACGTTCTCCCA
LOC_Os03g55430
Os.10390.1.S1_at--905--6711Chr03:31477706..31477730 (25 bp)
GTTCTCCCAACTTTTGCATTAGGTT
LOC_Os03g55430
Os.10390.1.S1_at--153--4951Chr03:31477721..31477745 (25 bp)
GCATTAGGTTTGCTTCTCCTATTGA
LOC_Os03g55430
Target Sequence 
TCTACTACTGCTGCGCGTTCTAATTAGCCTCAGGGATGAATCAACAACACCAAAGATCAATCGAGCACTGCTCGATCGGT
TGCTTTCTGGCCTCGCCGCCGCCTCGGTTCTTCCCAGCTCGGACTCGATCGGCTCCCGGCGAGCTTCGAATGAAGCTCGT
CGTGTTCTTGATTCGAGGCTGTCCCGGCGAAGTTTTGCTGAGACCAATCGTCCCGGCAAAAGAGGGGCTGCGAACCAGAA
CGAAATGGCACATATTGCAGAGGTTTTGCAAACTTGAAATAATAAGTATAGAGACAGAAACGATGATCACGATCTCGAGT
CGATCGATCATCAAATCGAGATGTAAAAAGTCAAATAAAAAGATTTTGGTTTTCTTTTTATCTATGTCAGTGAAATTTCT
GCTCATNACAACCAGAAGATCTTTGTCAGTACAGAAGAGATCTTCCACGTTCTCCCAACTTTTGCATTAGGTTTGCTTCT
CCTATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10390.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis