Browse Element(s) Details


Os.17749.2.S1_at

Description gb:CB668937
DB_XREF= gi:29672662
DB_XREF=OSJNEe01A20.f
CLONE=OSJNEe01A20
TID=Os.17749.2
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.17749 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_179091.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5545010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55400Os.55702.1.S1_at11/113+31456300..31457825expressed protein
LOC_Os03g55410Os.32471.1.S1_at11/113+31465668..31467190Peroxidase 51 precursor, putative, expressed
LOC_Os03g55420Os.11548.1.S1_at11/113+31469757..31472467Peroxidase 35 precursor, putative, expressed
LOC_Os03g55430Os.10390.1.S1_at11/113+31476797..31477784expressed protein
LOC_Os03g55440OsAffx.25719.1.S1_at11/113+31478415..31480076hypothetical protein
LOC_Os03g55450Os.17749.1.A1_at11/113+31481890..31483415expressed protein
LOC_Os03g55450Os.17749.2.S1_at10/113+31481890..31483415expressed protein
LOC_Os03g55460OsAffx.25720.1.S1_at11/113+31487190..31489692expressed protein
LOC_Os03g55470Os.13860.1.A1_at10/113+31492862..31497250expressed protein
LOC_Os03g55480NANA3+31501649..31502474hypothetical protein
LOC_Os03g55490Os.27816.1.S1_at11/113+31504991..31509412Casein kinase II, alpha chain, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17749.2.S1_at--104--1752Chr04:33092799..33093242 (25 bp)
ACCTCACCAGGCTGCTGAATCTGAA
NONE
Os.17749.2.S1_at--391--9011Chr03:31483187..31483211 (25 bp)
TGAATCTGAAGCTCACCAAGGTGGA
LOC_Os03g55450
Os.17749.2.S1_at--284--8031Chr03:31483133..31483157 (25 bp)
GGAGGGAAAACATCGCTCTGCACAA
LOC_Os03g55450
Os.17749.2.S1_at--707--4131Chr03:31483120..31483144 (25 bp)
CGCTCTGCACAACGCCCTGATTAGG
LOC_Os03g55450
Os.17749.2.S1_at--59--7971Chr03:31483094..31483118 (25 bp)
GGATCATCAGCAATGCGCTGTCCGG
LOC_Os03g55450
Os.17749.2.S1_at--569--3791Chr03:31483016..31483040 (25 bp)
CTCCCAGCGGGCAGTGCGTCGGCAT
LOC_Os03g55450
Os.17749.2.S1_at--810--1131Chr03:31483004..31483028 (25 bp)
AGTGCGTCGGCATCGCGCTACAGAG
LOC_Os03g55450
Os.17749.2.S1_at--199--6791Chr03:31482870..31482894 (25 bp)
GTTAGGTCTGCTCCATGTGTGCAGA
LOC_Os03g55450
Os.17749.2.S1_at--1088--4771Chr03:31482861..31482885 (25 bp)
GCTCCATGTGTGCAGAGCCGAAGCC
LOC_Os03g55450
Os.17749.2.S1_at--986--5391Chr03:31482842..31482866 (25 bp)
GAAGCCCGATAACTGCCCCATTGGG
LOC_Os03g55450
Os.17749.2.S1_at--204--2033Chr09:6804689..6804749 (24 bp)
ACTACGCCGACCTATGGTGCAAGGA
NONE
Target Sequence 
ACCTCACCAGGCTGCTGAATCTGAAGCTCACCAAGGTGGAGTTCGACAAGCTCTGCTACGCCACCATCGGGAGGGAAAAC
ATCGCTCTGCACAACGCCCTGATTAGGGGGATCATCAGCAATGCGCTGTCCGGGGTGCCCCCGCCCAGCCGCCAGGCGGT
GACGGGGCAGTCCGGGACGACCACGGCTCCCAGCGGGCAGTGCGTCGGCATCGCGCTACAGAGCGCCCGAAATGTAGGGG
CCGTGGTGGATTCNGGCGATGGGGACTTTGCGAGGGAACGGGCGGTTGCCGGCAAGGTGTTGTCNGTGGAGGATGGGGAG
GAGGTGGAGCANGTTAGGTCTGCTCCATGTGTGCAGAGCCGAAGCCCGATAACTGCCCCATTGGGGATTTCGACTACGCC
GACCTATGGTGCAAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17749.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis