Browse Element(s) Details


Os.27816.1.S1_at

Description gb:AK120812.1
DB_XREF= gi:37990435
TID=Os.27816.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.27816 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023014H13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023014H13, full insert sequence.
FL= gb:AK120812.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5549011/11Casein kinase II, alpha chain, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55440OsAffx.25719.1.S1_at11/113+31478415..31480076hypothetical protein
LOC_Os03g55450Os.17749.1.A1_at11/113+31481890..31483415expressed protein
LOC_Os03g55450Os.17749.2.S1_at10/113+31481890..31483415expressed protein
LOC_Os03g55460OsAffx.25720.1.S1_at11/113+31487190..31489692expressed protein
LOC_Os03g55470Os.13860.1.A1_at10/113+31492862..31497250expressed protein
LOC_Os03g55480NANA3+31501649..31502474hypothetical protein
LOC_Os03g55490Os.27816.1.S1_at11/113+31504991..31509412Casein kinase II, alpha chain, putative, expressed
LOC_Os03g55510NANA3+31530612..31530845hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004680molecular_functioncasein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27816.1.S1_at--1141--10451Chr03:31508149..31508173 (25 bp)
TTACTCGTTGGATTTGTGGAGCCTT
LOC_Os03g55490
Os.27816.1.S1_at--552--6851Chr03:31508182..31508283 (25 bp)
GTTTGCCGCAATGATATTCCGAGTC
LOC_Os03g55490
Os.27816.1.S1_at--65--9291Chr03:31508276..31508300 (25 bp)
TCCGAGTCGACCCTTTCTTTAATGG
LOC_Os03g55490
Os.27816.1.S1_at--889--4911Chr03:31508729..31508753 (25 bp)
GCTTGACCCGCAGCTTGAAAGACTT
LOC_Os03g55490
Os.27816.1.S1_at--156--8171Chr03:31508881..31508905 (25 bp)
GGAACAGACACCTAGCAAGCCCTGA
LOC_Os03g55490
Os.27816.1.S1_at--370--1671Chr03:31508898..31509004 (25 bp)
AGCCCTGAGGCTATTGATTTTGTAG
LOC_Os03g55490
Os.27816.1.S1_at--142--10031Chr03:31509002..31509026 (25 bp)
TAGACAGGTTGCTTCGCTACGATCA
LOC_Os03g55490
Os.27816.1.S1_at--422--6451Chr03:31509022..31509046 (25 bp)
GATCACCAGGAAAGGCCTACAGCAA
LOC_Os03g55490
Os.27816.1.S1_at--355--4551Chr03:31509197..31509221 (25 bp)
GCCCAATAGTGGTATGCGGCATATT
LOC_Os03g55490
Os.27816.1.S1_at--623--2111Chr03:31509307..31509331 (25 bp)
ACATGTAACCGTCACATCATTTGTG
LOC_Os03g55490
Os.27816.1.S1_at--317--3151Chr03:31509334..31509358 (25 bp)
AATTAATTCATTCCTCTCTGCTAAC
LOC_Os03g55490
Target Sequence 
TTACTCGTTGGATTTGTGGAGCCTTGGTTGCATGTTTGCCGCAATGATATTCCGAGTCGACCCTTTCTTTAATGGTCAGG
ATAACTACGACCAATTAGTCAAAATTACCGAGGTTCTTGGAACAGAAGATTTCTACAATTACCTTGAAAAGTATGGTCTT
GAGCTTGACCCGCAGCTTGAAAGACTTGTTGGAAGACATAATAGGAAGNCATGGTCAATGTTTGTTAACTCGGGGAACAG
ACACCTAGCAAGCCCTGAGGCTATTGATTTTGTAGACAGGTTGCTTCGCTACGATCACCAGGAAAGGCCTACAGCAAAGG
AAGCCATGGCTCATCCATATTTCAATCCAGTGAGAAGCACTTAAAACGGCAGGAAGAGTGCCCAATAGTGGTATGCGGCA
TATTTGACAATTTTTGCTACGGTGTCAAATATATAGAGGGAATTTAATTTTCAAGGCTGTATGGTTTATCCAGAATAAAT
CCTTGACCAACATGTAACCGTCACATCATTTGTGTGAATTAATTCATTCCTCTCTGCTAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27816.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis