Browse Element(s) Details


OsAffx.25720.1.S1_at

Description tigr:9631.m05409
TID=OsAffx.25720.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5546011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55410Os.32471.1.S1_at11/113+31465668..31467190Peroxidase 51 precursor, putative, expressed
LOC_Os03g55420Os.11548.1.S1_at11/113+31469757..31472467Peroxidase 35 precursor, putative, expressed
LOC_Os03g55430Os.10390.1.S1_at11/113+31476797..31477784expressed protein
LOC_Os03g55440OsAffx.25719.1.S1_at11/113+31478415..31480076hypothetical protein
LOC_Os03g55450Os.17749.1.A1_at11/113+31481890..31483415expressed protein
LOC_Os03g55450Os.17749.2.S1_at10/113+31481890..31483415expressed protein
LOC_Os03g55460OsAffx.25720.1.S1_at11/113+31487190..31489692expressed protein
LOC_Os03g55470Os.13860.1.A1_at10/113+31492862..31497250expressed protein
LOC_Os03g55480NANA3+31501649..31502474hypothetical protein
LOC_Os03g55490Os.27816.1.S1_at11/113+31504991..31509412Casein kinase II, alpha chain, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25720.1.S1_at--941--5791Chr03:31487415..31487439 (25 bp)
GACCGAATTTTTTTCATAGCCACTG
LOC_Os03g55460
OsAffx.25720.1.S1_at--343--311Chr03:31487430..31487454 (25 bp)
ATAGCCACTGAAGAGTGCAGACGGA
LOC_Os03g55460
OsAffx.25720.1.S1_at--817--6331Chr03:31489509..31489533 (25 bp)
GATGCTTATGCAGAGAAATGACAGT
LOC_Os03g55460
OsAffx.25720.1.S1_at--110--2311Chr03:31489543..31489567 (25 bp)
AAATGGATGTTGTCACGGAGGGCAT
LOC_Os03g55460
OsAffx.25720.1.S1_at--1029--3331Chr03:31489556..31489580 (25 bp)
CACGGAGGGCATTTTCGCCTTTTCA
LOC_Os03g55460
OsAffx.25720.1.S1_at--147--10251Chr03:31489568..31489592 (25 bp)
TTTCGCCTTTTCACGTGAGTGCTAA
LOC_Os03g55460
OsAffx.25720.1.S1_at--708--1891Chr03:31489580..31489604 (25 bp)
ACGTGAGTGCTAAATTTGCATGGGA
LOC_Os03g55460
OsAffx.25720.1.S1_at--1068--3471Chr03:31489598..31489622 (25 bp)
CATGGGAGGTACAGGAATCGCTTCT
LOC_Os03g55460
OsAffx.25720.1.S1_at--793--9871Chr03:31489607..31489631 (25 bp)
TACAGGAATCGCTTCTGGATGGAGG
LOC_Os03g55460
OsAffx.25720.1.S1_at--722--8031Chr03:31489631..31489655 (25 bp)
GGAGTACCTGGTTCTGTTTAGGATC
LOC_Os03g55460
OsAffx.25720.1.S1_at--336--3911Chr03:31489638..31489662 (25 bp)
CTGGTTCTGTTTAGGATCTAGTGCG
LOC_Os03g55460
Target Sequence 
GACCGAATTTTTTTCATAGCCACTGAAGAGTGCAGACGGAGGCGACGCCAAGGAGGTGCCGACGCCGGCGCTGGAGGCAG
AGGCGGAGGGCGCCGGTGCTGGGCGGAGGCGGCGGAGGCGGCGCACATGGCGGCGGCGGCGGCGCATAGGGCGGCGGCGG
TGCACAGGGCGGCCTGCGGTAGCTCCACCGTCGCCGTCGGGCTGCGGGAGCTCCACCGGCGTCGTCTCTGCAGCACCTGC
ACGGGGGATGGGGATGGGGATAGGATGCTTATGCAGAGAAATGACAGTAGCAATAGCAAATGGATGTTGTCACGGAGGGC
ATTTTCGCCTTTTCACGTGAGTGCTAAATTTGCATGGGAGGTACAGGAATCGCTTCTGGATGGAGGGAGTACCTGGTTCT
GTTTAGGATCTAGTGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25720.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis