Browse Element(s) Details


Os.1175.1.S1_at

Description gb:AB036787.1
DB_XREF= gi:12697578
GEN=OSCKA2
TID=Os.1175.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.1175 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) Nipponbare OSCKA2 mRNA for casein kinase II alpha subunit, complete cds.
PROD=casein kinase II alpha subunit
FL= gb:AB036788.1 gb:AB036787.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5538910/11Casein kinase II, alpha chain 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55350Os.10403.1.S1_at11/113+31426929..31429788cucumisin-like serine protease, putative, expressed
LOC_Os03g55360Os.23915.1.S1_at11/113+31434870..31439304DnaJ domain containing protein, expressed
LOC_Os03g55370OsAffx.13493.1.S1_at11/113+31440423..31441343hypothetical protein
LOC_Os03g55370OsAffx.24548.1.S1_x_at1/113+31440423..31441343hypothetical protein
LOC_Os03g55380Os.55956.1.S1_at11/113+31442709..31446679prolyl 4-hydroxylase, putative, expressed
LOC_Os03g55389Os.1175.1.S1_at10/113+31447755..31453402Casein kinase II, alpha chain 1, putative, expressed
LOC_Os03g55389Os.28405.1.S1_x_at5/113+31447755..31453402Casein kinase II, alpha chain 1, putative, expressed
LOC_Os03g55400Os.55702.1.S1_at11/113+31456300..31457825expressed protein
LOC_Os03g55410Os.32471.1.S1_at11/113+31465668..31467190Peroxidase 51 precursor, putative, expressed
LOC_Os03g55420Os.11548.1.S1_at11/113+31469757..31472467Peroxidase 35 precursor, putative, expressed
LOC_Os03g55430Os.10390.1.S1_at11/113+31476797..31477784expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004680molecular_functioncasein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1175.1.S1_at--182--2911Chr03:31449007..31449030 (24 bp)
AAGGTACTTGGAACAGAAGCACTAA
LOC_Os03g55389
Os.1175.1.S1_at--190--4891Chr03:31448980..31449004 (25 bp)
GCTTATTTGAACAAGTACCATATTG
LOC_Os03g55389
Os.1175.1.S1_at--702--6371Chr03:31448950..31448974 (25 bp)
GATCCTCAGCTTGAAGCTCTTGTTG
LOC_Os03g55389
Os.1175.1.S1_at--884--7991NONE
GGAGGCATAGTAGAAAACCATGGTC
NONE
Os.1175.1.S1_at--248--2651Chr03:31448834..31448858 (25 bp)
AACCATGGTCGAAATTCATTAATGC
LOC_Os03g55389
Os.1175.1.S1_at--279--3151Chr03:31448822..31448846 (25 bp)
AATTCATTAATGCTGATAACCAACA
LOC_Os03g55389
Os.1175.1.S1_at--483--3811Chr03:31448712..31448813 (25 bp)
CTCCTGAGGCTGTAGATTTTCTTGA
LOC_Os03g55389
Os.1175.1.S1_at--933--6531Chr03:31448698..31448722 (25 bp)
GATTTTCTTGATAAGCTTCTACGTT
LOC_Os03g55389
Os.1175.1.S1_at--973--8831Chr03:31448690..31448714 (25 bp)
TGATAAGCTTCTACGTTATGATCAC
LOC_Os03g55389
Os.1175.1.S1_at--250--6451Chr03:31448671..31448695 (25 bp)
GATCACCAAGATAGGCTCACTGCAC
LOC_Os03g55389
Os.1175.1.S1_at--1077--3211Chr03:31448665..31448689 (25 bp)
CAAGATAGGCTCACTGCACGTGAAG
LOC_Os03g55389
Target Sequence 
AAGGTACTTGGAACAGAAGCACTAAATGCTTATTTGAACAAGTACCATATTGAGCTTGATCCTCAGCTTGAAGCTCTTGT
TGGGAGGCATAGTAGAAAACCATGGTCGAAATTCATTAATGCTGATAACCAACATCTAGTATCTCCTGAGGCTGTAGATT
TTCTTGATAAGCTTCTACGTTATGATCACCAAGATAGGCTCACTGCACGTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1175.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis