Browse Element(s) Details


Os.55956.1.S1_at

Description gb:AK109047.1
DB_XREF= gi:32994256
TID=Os.55956.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55956 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-154-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-154-D12, full insert sequence.
FL= gb:AK109047.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5538011/11prolyl 4-hydroxylase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55330Os.51893.1.S1_at11/113+31415190..31419011ankyrin repeat family protein, putative, expressed
LOC_Os03g55340Os.52369.1.S1_at11/113+31419097..31422237pentatricopeptide, putative, expressed
LOC_Os03g55350Os.10403.1.S1_at11/113+31426929..31429788cucumisin-like serine protease, putative, expressed
LOC_Os03g55360Os.23915.1.S1_at11/113+31434870..31439304DnaJ domain containing protein, expressed
LOC_Os03g55370OsAffx.13493.1.S1_at11/113+31440423..31441343hypothetical protein
LOC_Os03g55370OsAffx.24548.1.S1_x_at1/113+31440423..31441343hypothetical protein
LOC_Os03g55380Os.55956.1.S1_at11/113+31442709..31446679prolyl 4-hydroxylase, putative, expressed
LOC_Os03g55389Os.1175.1.S1_at10/113+31447755..31453402Casein kinase II, alpha chain 1, putative, expressed
LOC_Os03g55389Os.28405.1.S1_x_at5/113+31447755..31453402Casein kinase II, alpha chain 1, putative, expressed
LOC_Os03g55400Os.55702.1.S1_at11/113+31456300..31457825expressed protein
LOC_Os03g55410Os.32471.1.S1_at11/113+31465668..31467190Peroxidase 51 precursor, putative, expressed
LOC_Os03g55420Os.11548.1.S1_at11/113+31469757..31472467Peroxidase 35 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0018401biological_processpeptidyl-proline hydroxylation to 4-hydroxy-L-proline
GO:0016491molecular_functionoxidoreductase activity
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55956.1.S1_at--63--5291Chr03:31445751..31445775 (25 bp)
GAAGGCGGAGAAACCATGTTCCCAT
LOC_Os03g55380
Os.55956.1.S1_at--201--9531Chr03:31445925..31445949 (25 bp)
TCTCTTGTTTTACTCCCTTATGGTA
LOC_Os03g55380
Os.55956.1.S1_at--857--51Chr03:31445959..31446268 (25 bp)
ATTGATCCGACATCTCTTCATGGTA
LOC_Os03g55380
Os.55956.1.S1_at--799--10531Chr03:31446260..31446284 (25 bp)
TTCATGGTAGCTGCCCAGTGATCAA
LOC_Os03g55380
Os.55956.1.S1_at--370--711Chr03:31446468..31446492 (25 bp)
ATGATGTCACTTTCTCCTTTTGAGT
LOC_Os03g55380
Os.55956.1.S1_at--353--3131Chr03:31446532..31446556 (25 bp)
AATTTTTCCACACTTGTAGGGCAAG
LOC_Os03g55380
Os.55956.1.S1_at--746--2251Chr03:31446558..31446582 (25 bp)
AAATTTGCTGCTATGGGTGACCTGA
LOC_Os03g55380
Os.55956.1.S1_at--543--7371Chr03:31446574..31446598 (25 bp)
GTGACCTGATCTTCTGCAAGTCTTT
LOC_Os03g55380
Os.55956.1.S1_at--804--6171Chr03:31446600..31446624 (25 bp)
GAGGAGCTGGCTTGTACTTTCTCAA
LOC_Os03g55380
Os.55956.1.S1_at--646--6991Chr03:31446628..31446652 (25 bp)
GTACGGCACGTCGATTAGTCTGAAT
LOC_Os03g55380
Os.55956.1.S1_at--80--10451Chr03:31446642..31446666 (25 bp)
TTAGTCTGAATAGCTTCCTCTGGGC
LOC_Os03g55380
Target Sequence 
GAAGGCGGAGAAACCATGTTCCCATATGAGAACGGGGAAAACATGGATATAGGGTATGACTATGAAAAGTGCATTGGCTT
AAAGGTTAAACCAAGGAAGGGTGATGGTCTCTTGTTTTACTCCCTTATGGTAAATGGCACCATTGATCCGACATCTCTTC
ATGGTAGCTGCCCAGTGATCAAAGGAGAAAAATGGGTCGCCACAAAATGGATTAGAGACAAGAGTAAGGCAGTGTAAATG
TGGTATAGGAGTCTCCACGCCCCATGTAGATCATAGGCATATATATACTAAACAATCTTTGTACACGTTTCTGTACGAAC
ATTACATTTATTCAATTTTCATCAGCATGAATGAACTAGTGAGAAATGATGTCACTTTCTCCTTTTGAGTCTTCGAAGAG
AAGTATTTGCACTTGTAGGTCTGGGTGTTAATTTTTCCACACTTGTAGGGCAAGAAAATTTGCTGCTATGGGTGACCTGA
TCTTCTGCAAGTCTTTGGAGGAGCTGGCTTGTACTTTCTCAACTTGTACGGCACGTCGATTAGTCTGAATAGCTTCCTCT
GGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55956.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis