Browse Element(s) Details


Os.52369.1.S1_at

Description gb:AK066684.1
DB_XREF= gi:32976702
TID=Os.52369.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52369 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013068H20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013068H20, full insert sequence.
FL= gb:AK066684.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5534011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55260Os.10430.1.S1_at11/113+31392494..31394611Cytochrome P450 family protein, expressed
LOC_Os03g55270Os.10385.1.S1_at11/113+31394612..31397826TIP41-like family protein, expressed
LOC_Os03g55280Os.10389.1.S1_at11/113+31399385..31402519aspartate-semialdehyde dehydrogenase family protein, expressed
LOC_Os03g55290Os.4780.1.S1_at5/113+31404120..31404506Gibberellin-regulated protein 2 precursor, putative, expressed
LOC_Os03g55300OsAffx.3612.1.S1_at11/113+31407632..31408360expressed protein
LOC_Os03g55310NANA3+31408868..31410664SWIB complex BAF60b domain-containing protein, putative, expressed
LOC_Os03g55320Os.38297.1.S1_a_at11/113+31411064..31413815protein phosphatase 2C family protein, putative, expressed
LOC_Os03g55330Os.51893.1.S1_at11/113+31415190..31419011ankyrin repeat family protein, putative, expressed
LOC_Os03g55340Os.52369.1.S1_at11/113+31419097..31422237pentatricopeptide, putative, expressed
LOC_Os03g55350Os.10403.1.S1_at11/113+31426929..31429788cucumisin-like serine protease, putative, expressed
LOC_Os03g55360Os.23915.1.S1_at11/113+31434870..31439304DnaJ domain containing protein, expressed
LOC_Os03g55370OsAffx.13493.1.S1_at11/113+31440423..31441343hypothetical protein
LOC_Os03g55370OsAffx.24548.1.S1_x_at1/113+31440423..31441343hypothetical protein
LOC_Os03g55380Os.55956.1.S1_at11/113+31442709..31446679prolyl 4-hydroxylase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52369.1.S1_at--654--10811Chr03:31421654..31421678 (25 bp)
TTGTGCTTAAAGTGCTCAACTGCTG
LOC_Os03g55340
Os.52369.1.S1_at--842--3851Chr03:31421676..31421700 (25 bp)
CTGACTGCTAACCAGCTAGGTGACT
LOC_Os03g55340
Os.52369.1.S1_at--802--4851Chr03:31421690..31421714 (25 bp)
GCTAGGTGACTACTTGCTGCAATAT
LOC_Os03g55340
Os.52369.1.S1_at--163--6291Chr03:31421818..31421842 (25 bp)
GATGTTCTCAATTCATGTCTTCATG
LOC_Os03g55340
Os.52369.1.S1_at--212--751Chr03:31421832..31421856 (25 bp)
ATGTCTTCATGCCATACTGCAGAAT
LOC_Os03g55340
Os.52369.1.S1_at--1038--1431Chr03:31421907..31421931 (25 bp)
AGAACTGAACCCTTGTCCATGAAAA
LOC_Os03g55340
Os.52369.1.S1_at--256--5891Chr03:31421999..31422023 (25 bp)
GAGCTCAAATTTCACTGCAGGATTA
LOC_Os03g55340
Os.52369.1.S1_at--1130--9591Chr03:31422071..31422095 (25 bp)
TCATTTGACCCTGTGCTGAAGCTAG
LOC_Os03g55340
Os.52369.1.S1_at--28--4751Chr03:31422085..31422109 (25 bp)
GCTGAAGCTAGGCACTGCACAGTAT
LOC_Os03g55340
Os.52369.1.S1_at--364--10331Chr03:31422148..31422172 (25 bp)
TTTCATATGTCTTCACTGCTTTCTG
LOC_Os03g55340
Os.52369.1.S1_at--849--1971Chr03:31422162..31422186 (25 bp)
ACTGCTTTCTGTGTGAGTTGTTACA
LOC_Os03g55340
Target Sequence 
TTGTGCTTAAAGTGCTCAACTGCTGACTGCTAACCAGCTAGGTGACTACTTGCTGCAATATCAGATTGAGACTTTGTCAT
CATAAAGAGATCAATATGCACTAGCTGATCCAAATGAGCTATTAGGTGCAAGCATCCTGCAAGAACTTGTCAGTTAGGAA
TGATGATGTTCTCAATTCATGTCTTCATGCCATACTGCAGAATAACAAATCCACTATATCATCTATGTTGTACAAATGAT
CAGTGGAGCATGAAGAACTGAACCCTTGTCCATGAAAAGTTGGAGAATTTGTTGAACGGTTGAACCTCAAGATGAAGAAT
TTAAGAATTATGCAAGGAAATTATTGAGCTCAAATTTCACTGCAGGATTATAATTCATAGAGCAGAAGGTGACATCAAAA
TAACAAAGGACAATTGCTCATTTGACCCTGTGCTGAAGCTAGGCACTGCACAGTATGTACATGTGCTGACAAGCAAGGTA
AACAGTAGAAAATTTTTCATATGTCTTCACTGCTTTCTGTGTGAGTTGTTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52369.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis