Browse Element(s) Details


Os.38297.1.S1_a_at

Description gb:AK066083.1
DB_XREF= gi:32976101
TID=Os.38297.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38297 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-202-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013050O18, full insert sequence.
FL= gb:AK066083.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5532011/11protein phosphatase 2C family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55250Os.27225.1.S1_at11/113+31387566..31388756Cytochrome P450 81E1, putative, expressed
LOC_Os03g55260Os.10430.1.S1_at11/113+31392494..31394611Cytochrome P450 family protein, expressed
LOC_Os03g55270Os.10385.1.S1_at11/113+31394612..31397826TIP41-like family protein, expressed
LOC_Os03g55280Os.10389.1.S1_at11/113+31399385..31402519aspartate-semialdehyde dehydrogenase family protein, expressed
LOC_Os03g55290Os.4780.1.S1_at5/113+31404120..31404506Gibberellin-regulated protein 2 precursor, putative, expressed
LOC_Os03g55300OsAffx.3612.1.S1_at11/113+31407632..31408360expressed protein
LOC_Os03g55310NANA3+31408868..31410664SWIB complex BAF60b domain-containing protein, putative, expressed
LOC_Os03g55320Os.38297.1.S1_a_at11/113+31411064..31413815protein phosphatase 2C family protein, putative, expressed
LOC_Os03g55330Os.51893.1.S1_at11/113+31415190..31419011ankyrin repeat family protein, putative, expressed
LOC_Os03g55340Os.52369.1.S1_at11/113+31419097..31422237pentatricopeptide, putative, expressed
LOC_Os03g55350Os.10403.1.S1_at11/113+31426929..31429788cucumisin-like serine protease, putative, expressed
LOC_Os03g55360Os.23915.1.S1_at11/113+31434870..31439304DnaJ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38297.1.S1_a_at--689--1451Chr03:31411624..31411648 (25 bp)
AGAAGGGAGTGAGGCGCCATTTCCA
LOC_Os03g55320
Os.38297.1.S1_a_at--713--2191Chr03:31411546..31411570 (25 bp)
ACACAAGGGTCGTCGACTCGAGCAG
LOC_Os03g55320
Os.38297.1.S1_a_at--811--5711Chr03:31411532..31411556 (25 bp)
GACTCGAGCAGCAACTGCACCAACG
LOC_Os03g55320
Os.38297.1.S1_a_at--802--6951Chr03:31411434..31411458 (25 bp)
GTAGAAGAAGACTGGGACGCCTCCC
LOC_Os03g55320
Os.38297.1.S1_a_at--895--7631Chr03:31411421..31411445 (25 bp)
GGGACGCCTCCCTTGAAAAGATCAA
LOC_Os03g55320
Os.38297.1.S1_a_at--154--5531Chr03:31411407..31411431 (25 bp)
GAAAAGATCAAGACGGTCTCTTGTT
LOC_Os03g55320
Os.38297.1.S1_a_at--115--2091Chr03:31411306..31411330 (25 bp)
ACATAAATTAGTAGCGGCGCGTGGC
LOC_Os03g55320
Os.38297.1.S1_a_at--772--6731Chr03:31411203..31411227 (25 bp)
GTTCTTCTTTGGTTTATATTTCTGC
LOC_Os03g55320
Os.38297.1.S1_a_at--14--8992Chr03:31411178..31411202 (25 bp)
TGAACCAGCAGTTAACTGTTGACTG
LOC_Os03g55320
Os.38297.1.S1_a_at--782--3851Chr03:31411163..31411187 (25 bp)
CTGTTGACTGGGAATTACCGCATTT
LOC_Os03g55320
Os.38297.1.S1_a_at--943--5212Chr03:31411152..31411176 (25 bp)
GAATTACCGCATTTATGTGCGGCAA
LOC_Os03g55320
Target Sequence 
AGAAGGGAGTGAGGCGCCATTTCCACGACGACATCAGCGTCATCGTCGTCTACCTTGACCGCCACCGCGGTCGCCGTCAC
ACAAGGGTCGTCGACTCGAGCAGCAACTGCACCAACGCCCCCGTCGACATCTACTCCTCCAACTCCGGCCAATCCGTGGA
GACTCTTCAAGCCCATCGGGGCTCCGGTTGGTAGAAGAAGACTGGGACGCCTCCCTTGAAAAGATCAAGACGGTCTCTTG
TTAATTAGTAAAAACATGTAGAGCCGCTGATCAGTAACACTAGCTGCAGTGGCATCATCGGAAGAAACGCGGGAATGTAC
ATAAATTAGTAGCGGCGCGTGGCATTTTGATGTGGGGAAGAATATTTGATTTTTTTTCCTTCCTTTTTGGGCTAATTTAA
TTGCAGAGATTACTTTTTGCTGTTCTTCTTTGGTTTATATTTCTGCTGAACCAGCAGTTAACTGTTGACTGGGAATTACC
GCATTTATGTGCGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38297.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis