Browse Element(s) Details


OsAffx.3612.1.S1_at

Description tigr:9631.m05391
TID=OsAffx.3612.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5530011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55240Os.11193.1.S1_at10/113+31379697..31385021Cytochrome P450 family protein, expressed
LOC_Os03g55240Os.51328.1.S1_at2/113+31379697..31385021Cytochrome P450 family protein, expressed
LOC_Os03g55250Os.27225.1.S1_at11/113+31387566..31388756Cytochrome P450 81E1, putative, expressed
LOC_Os03g55260Os.10430.1.S1_at11/113+31392494..31394611Cytochrome P450 family protein, expressed
LOC_Os03g55270Os.10385.1.S1_at11/113+31394612..31397826TIP41-like family protein, expressed
LOC_Os03g55280Os.10389.1.S1_at11/113+31399385..31402519aspartate-semialdehyde dehydrogenase family protein, expressed
LOC_Os03g55290Os.4780.1.S1_at5/113+31404120..31404506Gibberellin-regulated protein 2 precursor, putative, expressed
LOC_Os03g55300OsAffx.3612.1.S1_at11/113+31407632..31408360expressed protein
LOC_Os03g55310NANA3+31408868..31410664SWIB complex BAF60b domain-containing protein, putative, expressed
LOC_Os03g55320Os.38297.1.S1_a_at11/113+31411064..31413815protein phosphatase 2C family protein, putative, expressed
LOC_Os03g55330Os.51893.1.S1_at11/113+31415190..31419011ankyrin repeat family protein, putative, expressed
LOC_Os03g55340Os.52369.1.S1_at11/113+31419097..31422237pentatricopeptide, putative, expressed
LOC_Os03g55350Os.10403.1.S1_at11/113+31426929..31429788cucumisin-like serine protease, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3612.1.S1_at--702--9191Chr03:31407760..31407784 (25 bp)
TCCAGAGGCCGCACGGCTGGCCGAA
LOC_Os03g55300
OsAffx.3612.1.S1_at--1141--7751Chr03:31407794..31407818 (25 bp)
GGTGAACGTCGCACGGCCGGCCGAA
LOC_Os03g55300
OsAffx.3612.1.S1_at--908--3731Chr03:31407857..31407881 (25 bp)
CTCGACGAAGCCAAGACGTCGACGG
LOC_Os03g55300
OsAffx.3612.1.S1_at--1107--3791Chr03:31407889..31407913 (25 bp)
CTCCTCAACAATCGGCGGCGGAGGA
LOC_Os03g55300
OsAffx.3612.1.S1_at--926--1351Chr03:31407940..31407964 (25 bp)
AGAGACGCGCGTAGCGGGATCCGAA
LOC_Os03g55300
OsAffx.3612.1.S1_at--577--1531Chr03:31407988..31408012 (25 bp)
AGCAGTGGCCACGTTCACCAAGGTG
LOC_Os03g55300
OsAffx.3612.1.S1_at--782--6131Chr03:31408081..31408105 (25 bp)
GAGGTGGCCCTCTCCGGTACCTGTC
LOC_Os03g55300
OsAffx.3612.1.S1_at--514--8231Chr03:31408121..31408145 (25 bp)
GGCAACAAAGCCAAGGCGCTCCTTT
LOC_Os03g55300
OsAffx.3612.1.S1_at--972--2351Chr03:31408127..31408151 (25 bp)
AAAGCCAAGGCGCTCCTTTCTGACG
LOC_Os03g55300
OsAffx.3612.1.S1_at--660--871Chr03:31408134..31408158 (25 bp)
AGGCGCTCCTTTCTGACGGCGACGA
LOC_Os03g55300
OsAffx.3612.1.S1_at--91--4731Chr03:31408240..31408264 (25 bp)
GCTGGTGCACGGTGGCGATATGCAG
LOC_Os03g55300
Target Sequence 
TCCAGAGGCCGCACGGCTGGCCGAAACCGGTGGGGGTGAACGTCGCACGGCCGGCCGAATCTGGCGGGGGCGGAGGTCAC
ACCGCCGCCGCCGCCACCTCGACGAAGCCAAGACGTCGACGGCCTTGTCCTCCTCAACAATCGGCGGCGGAGGAGAGCCT
CCAGTCGCTGGAGCAGCGGGAGAGACGCGCGTAGCGGGATCCGAAGGAGGCGCGTGGCGGCGGCGGGCAGCAGTGGCCAC
GTTCACCAAGGTGGCCCCCTCCGCTCTGCTCACTGCATCGGCCGCCCAAGGTGGCCGCTACAGGTCTTCGCTCCGCTCGC
CGAGGTGGCCCTCTCCGGTACCTGTCCCCCATCTCGCCGGCGGCAACAAAGCCAAGGCGCTCCTTTCTGACGGCGACGAC
GACGGTGAGCTCGGGCAAAGGATGCAAGCTAGCGACGACGCGCCTCCTTCCCCATGGTGGCAGCAGCACGAGCGGAGGGA
GCTGGTGCACGGTGGCGATATGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3612.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis