Browse Element(s) Details


OsAffx.13493.1.S1_at

Description tigr:9631.m05399
TID=OsAffx.13493.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5537011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55330Os.51893.1.S1_at11/113+31415190..31419011ankyrin repeat family protein, putative, expressed
LOC_Os03g55340Os.52369.1.S1_at11/113+31419097..31422237pentatricopeptide, putative, expressed
LOC_Os03g55350Os.10403.1.S1_at11/113+31426929..31429788cucumisin-like serine protease, putative, expressed
LOC_Os03g55360Os.23915.1.S1_at11/113+31434870..31439304DnaJ domain containing protein, expressed
LOC_Os03g55370OsAffx.13493.1.S1_at11/113+31440423..31441343hypothetical protein
LOC_Os03g55370OsAffx.24548.1.S1_x_at1/113+31440423..31441343hypothetical protein
LOC_Os03g55380Os.55956.1.S1_at11/113+31442709..31446679prolyl 4-hydroxylase, putative, expressed
LOC_Os03g55389Os.1175.1.S1_at10/113+31447755..31453402Casein kinase II, alpha chain 1, putative, expressed
LOC_Os03g55389Os.28405.1.S1_x_at5/113+31447755..31453402Casein kinase II, alpha chain 1, putative, expressed
LOC_Os03g55400Os.55702.1.S1_at11/113+31456300..31457825expressed protein
LOC_Os03g55410Os.32471.1.S1_at11/113+31465668..31467190Peroxidase 51 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0016020cellular_componentmembrane
GO:0015079molecular_functionpotassium ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13493.1.S1_at--934--3171Chr03:31440482..31440506 (25 bp)
CAATACTTTTTATGTGCCAATGGCA
LOC_Os03g55370
OsAffx.13493.1.S1_at--278--4392Chr03:31440497..31440521 (25 bp)
GCCAATGGCATGTGGGACCCATGTC
LOC_Os03g55370
OsAffx.13493.1.S1_at--214--7471Chr03:31440545..31440569 (25 bp)
GTGTGACAACCAAATAGACGCCAAA
LOC_Os03g55370
OsAffx.13493.1.S1_at--773--4931Chr03:31440878..31440902 (25 bp)
GCATTTGGGCTGTTATACAACGGAA
LOC_Os03g55370
OsAffx.13493.1.S1_at--602--6471Chr03:31440920..31440944 (25 bp)
GATACCGCGGTATCAGGTCGTGATA
LOC_Os03g55370
OsAffx.13493.1.S1_at--926--7751Chr03:31441106..31441130 (25 bp)
GGTGATACCCACTGGATATCAAGTA
LOC_Os03g55370
OsAffx.13493.1.S1_at--70--10331Chr03:31441132..31441156 (25 bp)
TTTCAATTGGGTACCAGAGCCTCGG
LOC_Os03g55370
OsAffx.13493.1.S1_at--766--5171Chr03:31441176..31441200 (25 bp)
GCAATGGCGCCGTTGTACGTGTACA
LOC_Os03g55370
OsAffx.13493.1.S1_at--996--6991Chr03:31441190..31441214 (25 bp)
GTACGTGTACAGGAGCGTGTTTGCT
LOC_Os03g55370
OsAffx.13493.1.S1_at--415--9511Chr03:31441264..31441288 (25 bp)
TCTCGCTCGTATTTCTGGATGTTCA
LOC_Os03g55370
OsAffx.13493.1.S1_at--1108--6871Chr03:31441272..31441296 (25 bp)
GTATTTCTGGATGTTCACCCTTGTC
LOC_Os03g55370
Target Sequence 
CAATACTTTTTATGTGCCAATGGCATGTGGGACCCATGTCATGATGAAGAAATCTTGCCATAAGTGTGACAACCAAATAG
ACGCCAAACTTGGTCAAAGTAGTACTCATATTTATCTATCTATTATAGCATTTGGGCTGTTATACAACGGAATCCCGTTC
GGACGGGATGATACCGCGGTATCAGGTCGTGATACCTATCAGAAGATGATACTTGCGAAGTATCAGGTGATACCCACTGG
ATATCAAGTAATTTCAATTGGGTACCAGAGCCTCGGGGTGGTGTACGGCAAGGTGGCAATGGCGCCGTTGTACGTGTACA
GGAGCGTGTTTGCTGGCGGCGACATCGAGCACTCGGTGGGGAACGAGGAGATCTACGGCGTCCTCTCGCTCGTATTTCTG
GATGTTCACCCTTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13493.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis