Browse Element(s) Details


Os.10477.2.S1_x_at

Description gb:AK108343.1
DB_XREF= gi:32993552
TID=Os.10477.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10477 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-142-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-142-B03, full insert sequence.
FL= gb:AK108343.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g193101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g19274NANA7+11403510..11408208retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g19290OsAffx.22028.1.S1_at11/117+11416294..11417842hypothetical protein
LOC_Os07g19300NANA7+11418861..11421764retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g19310OsAffx.5375.1.S1_at11/117+11428869..11429193hypothetical protein
LOC_Os07g19310Os.10477.2.S1_x_at1/117+11428869..11429193hypothetical protein
LOC_Os07g19320OsAffx.22029.1.S1_at11/117+11430290..11434184NB-ARC domain containing protein
LOC_Os07g19330OsAffx.9850.1.S1_s_at11/117+11436101..11436766hypothetical protein
LOC_Os07g19330OsAffx.9850.2.S1_at11/117+11436101..11436766hypothetical protein
LOC_Os07g19340NANA7+11443742..11444970retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g19350OsAffx.28521.2.S1_s_at11/117+11451905..11452377hypothetical protein
LOC_Os07g19350OsAffx.28521.1.S1_at11/117+11451905..11452377hypothetical protein
LOC_Os07g19360NANA7+11454139..11454667retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10477.2.S1_x_at--897--9251Chr05:6702081..6702105 (25 bp)
TCCTCAGCTGTGGACGACGCGACAA
NONE
Os.10477.2.S1_x_at--819--7391Chr05:6701966..6701990 (25 bp)
GTGATGGCCTAGGACTGATTGCTAA
NONE
Os.10477.2.S1_x_at--725--9831Chr05:6701944..6701968 (25 bp)
TAAAGGGACGATGCAGCCGACCGGC
NONE
Os.10477.2.S1_x_at--249--4611Chr05:6701921..6701945 (25 bp)
GCGACGATCATTCTTGCGCGAATTG
NONE
Os.10477.2.S1_x_at--559--6213Chr07:11429133..11429152 (20 bp)
GAGGCGTCGTTCTGGCGTTGATCCC
LOC_Os07g19310
Os.10477.2.S1_x_at--616--3231Chr05:6701765..6701789 (25 bp)
CTACCGTTCTCCGAGTGAAAACCTG
NONE
Os.10477.2.S1_x_at--674--7371Chr05:6701719..6701743 (25 bp)
GTGACGGAGATCCACGTCGTGTCCT
NONE
Os.10477.2.S1_x_at--766--8551Chr05:6701691..6701715 (25 bp)
TGGAGGCACCGCTTTGGAGAAACAT
NONE
Os.10477.2.S1_x_at--212--8492Chr01:24589294..24589318 (25 bp)
TGGCTTCGAAGCTTTTCAGTACTTG
NONE
Os.10477.2.S1_x_at--327--2071Chr05:6701612..6701636 (25 bp)
ACTTGGTTTTGATGAGGCCTTCGCT
NONE
Os.10477.2.S1_x_at--45--10052Chr01:24589342..24589366 (25 bp)
TAGTCCCACTTTTTGTTTTGCGGCG
NONE
Target Sequence 
TCCTCAGCTGTGGACGACGCGACAAGGGCAGCGGTCAGAGGGCAGCAGGAGGCGTGGGTGGCCGCGGCAGGAGGGCGAGT
GCTGCGGCTGGTCTGGCGATCTGCCAGAGCTGTGGGTGATGGCCTAGGACTGATTGCTAAAGGGACGATGCAGCCGACCG
GCGACGATCATTCTTGCGCGAATTGGGTGTGTGGGTTTGGACGGGAAATCGCTGGCGAAAGCCTCGCCGTGCCATTGGCC
GGCTGACGACGGCGGCGCCTTTGGCGTCGTTCCCCTCCTTGGAGGCGTCGTTCTGGCGTTGATCCCTCTCCTTTCCCTAC
CGTTCTCCGAGTGAAAACCTGGCTCCGGCTTCCGGACGAGCGGTGACGGAGATCCACGTCGTGTCCTCCTTGGAGGCACC
GCTTTGGAGAAACATTTTCGTGCAAGGATGTAGTTAATGGTCTATGCATTGGCTTCGAAGCTTTTCAGTACTTGGTTTTG
ATGAGGCCTTCGCTGTCTAGTCCCACTTTTTGTTTTGCGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10477.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis