Browse Element(s) Details


Os.10494.1.S1_at

Description gb:AK059681.1
DB_XREF= gi:32969699
TID=Os.10494.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10494 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) beta-1,3-glucanase-like protein (B1066G12.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-031-H08, full insert sequence.
FL= gb:AK059681.1 gb:AK102517.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1414011/11Glucan endo-1,3-beta-glucosidase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14110OsAffx.11044.1.S1_x_at8/111+7900615..7901557expressed protein
LOC_Os01g14120OsAffx.11045.1.S1_at11/111+7921197..7921589hypothetical protein
LOC_Os01g14130OsAffx.23232.1.S1_x_at11/111+7923660..7924361expressed protein
LOC_Os01g14130OsAffx.23232.1.S1_at11/111+7923660..7924361expressed protein
LOC_Os01g14140Os.10494.1.S1_at11/111+7924892..7926564Glucan endo-1,3-beta-glucosidase precursor, putative, expressed
LOC_Os01g14160Os.29992.2.S1_x_at11/111+7932972..7934377retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g14160OsAffx.5924.1.S1_x_at2/111+7932972..7934377retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g14160OsAffx.5924.1.S1_at1/111+7932972..7934377retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g14170OsAffx.31422.1.S1_at1/111+7937178..7940562hypothetical protein
LOC_Os01g14180OsAffx.23233.1.S1_at11/111+7942016..7943774expressed protein
LOC_Os01g14180OsAffx.23239.1.S1_x_at1/111+7942016..7943774expressed protein
LOC_Os01g14190OsAffx.13631.4.S1_s_at11/111+7944195..7946605hAT family dimerisation domain containing protein
LOC_Os01g14190OsAffx.22917.1.S1_x_at3/111+7944195..7946605hAT family dimerisation domain containing protein
LOC_Os01g14200NANA1+7950225..7961102AT hook motif-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10494.1.S1_at--39--5611Chr01:7925508..7925532 (25 bp)
GACAAGGTTCTTACGGCGAATCTCA
LOC_Os01g14140
Os.10494.1.S1_at--839--1091Chr01:7925455..7925479 (25 bp)
AGTGATTCAGCAAGGTGGCCCGTGC
LOC_Os01g14140
Os.10494.1.S1_at--1096--3471Chr01:7925365..7925389 (25 bp)
CAGGAATGCCTGGAACTGCTACTTC
LOC_Os01g14140
Os.10494.1.S1_at--242--7191Chr01:7925329..7925349 (21 bp)
GTCGTGCAGTCTGACCCAAGTTATG
LOC_Os01g14140
Os.10494.1.S1_at--263--1091Chr01:7925162..7925186 (25 bp)
AGGGCCTACGCAGCTGAGTTTGTAT
LOC_Os01g14140
Os.10494.1.S1_at--497--6271Chr01:7925134..7925158 (25 bp)
GATGTCTTTTACTCCCATGTTAGCA
LOC_Os01g14140
Os.10494.1.S1_at--1108--1251Chr01:7925103..7925127 (25 bp)
AGATTTCGTGGCGATGCCCTAGATC
LOC_Os01g14140
Os.10494.1.S1_at--214--4551Chr01:7925088..7925112 (25 bp)
GCCCTAGATCCTCTGATGCTTAGTT
LOC_Os01g14140
Os.10494.1.S1_at--213--431Chr01:7925033..7925057 (25 bp)
ATCTTGGATGCTGTTTGTGGCGTCC
LOC_Os01g14140
Os.10494.1.S1_at--863--8811Chr01:7924968..7924992 (25 bp)
TGTTGATCCACATGCTTCATTGCTT
LOC_Os01g14140
Os.10494.1.S1_at--665--3871Chr01:7924942..7924966 (25 bp)
CTGTTTCCTAGCATCTCTTGTTTTC
LOC_Os01g14140
Target Sequence 
GACAAGGTTCTTACGGCGAATCTCAACTACGCCTGCTCTCAGGTGAACTGTGGAGTGATTCAGCAAGGTGGCCCGTGCTT
CAACCCCAACAACCTGGTGTCGCACGCCGCAGTCGCCATGAACCTCTACTATGCTGCCCATGGCAGGAATGCCTGGAACT
GCTACTTCCAGAACTCAGCTCTCGTCGTGCAGTCTGACCCAAGTTATGGNTTCCTGCACGTACTACTGATTTTAAAACTG
AGGTCGAGGTCGAGGCAGGGCCTACGCAGCTGAGTTTGTATTAGGATGTCTTTTACTCCCATGTTAGCAGTGCCGAGATT
TCGTGGCGATGCCCTAGATCCTCTGATGCTTAGTTTATTGATAAGATGAACATTGATTTGCTCGGATCTTGGATGCTGTT
TGTGGCGTCCATTCCCATCAACCTTCATTGGATGTTTGGAAATTCAGACTTGTTGATCCACATGCTTCATTGCTTCCTGT
TTCCTAGCATCTCTTGTTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10494.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis