Browse Element(s) Details


OsAffx.23232.1.S1_x_at

Description tigr:9629.m01391
TID=OsAffx.23232.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1413011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14110OsAffx.11044.1.S1_x_at8/111+7900615..7901557expressed protein
LOC_Os01g14120OsAffx.11045.1.S1_at11/111+7921197..7921589hypothetical protein
LOC_Os01g14130OsAffx.23232.1.S1_x_at11/111+7923660..7924361expressed protein
LOC_Os01g14130OsAffx.23232.1.S1_at11/111+7923660..7924361expressed protein
LOC_Os01g14140Os.10494.1.S1_at11/111+7924892..7926564Glucan endo-1,3-beta-glucosidase precursor, putative, expressed
LOC_Os01g14160Os.29992.2.S1_x_at11/111+7932972..7934377retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g14160OsAffx.5924.1.S1_x_at2/111+7932972..7934377retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g14160OsAffx.5924.1.S1_at1/111+7932972..7934377retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g14170OsAffx.31422.1.S1_at1/111+7937178..7940562hypothetical protein
LOC_Os01g14180OsAffx.23233.1.S1_at11/111+7942016..7943774expressed protein
LOC_Os01g14180OsAffx.23239.1.S1_x_at1/111+7942016..7943774expressed protein
LOC_Os01g14190OsAffx.13631.4.S1_s_at11/111+7944195..7946605hAT family dimerisation domain containing protein
LOC_Os01g14190OsAffx.22917.1.S1_x_at3/111+7944195..7946605hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23232.1.S1_x_at--311--5991Chr01:7924233..7924257 (25 bp)
GAGACAGCCTGAGACGCTGCCGTTC
LOC_Os01g14130
OsAffx.23232.1.S1_x_at--491--1831Chr01:7924220..7924244 (25 bp)
ACGCTGCCGTTCTCGGACACCATGA
LOC_Os01g14130
OsAffx.23232.1.S1_x_at--700--10651Chr01:7924109..7924133 (25 bp)
TTCCTCACGCTCTCCAAAGACGAGG
LOC_Os01g14130
OsAffx.23232.1.S1_x_at--790--9491Chr01:7924099..7924123 (25 bp)
TCTCCAAAGACGAGGAGCGGTTGCA
LOC_Os01g14130
OsAffx.23232.1.S1_x_at--210--6671Chr01:7924080..7924104 (25 bp)
GTTGCAGGAAGAACCCCGAGGCGCC
LOC_Os01g14130
OsAffx.23232.1.S1_x_at--827--8311Chr01:7924003..7924027 (25 bp)
GGCTCATGGCGCTGCTCGGCTTGTC
LOC_Os01g14130
OsAffx.23232.1.S1_x_at--1085--9411Chr01:7923877..7923901 (25 bp)
TCGGGCCCAAGTGCGACAAGGAGAA
LOC_Os01g14130
OsAffx.23232.1.S1_x_at--242--8531Chr01:7923844..7923868 (25 bp)
TGGACGGCTGGGTAGAGCATTACTT
LOC_Os01g14130
OsAffx.23232.1.S1_x_at--796--10011Chr01:7923832..7923856 (25 bp)
TAGAGCATTACTTCAGCGGCGGCGA
LOC_Os01g14130
OsAffx.23232.1.S1_x_at--87--7711Chr01:7923717..7923741 (25 bp)
GGGTGCTTCACCTTTTGCCTTCCCG
LOC_Os01g14130
OsAffx.23232.1.S1_x_at--420--3891Chr01:7923694..7923718 (25 bp)
CGGCCACCGTGAAGGAGTTCTTGGA
LOC_Os01g14130
Target Sequence 
GAGACAGCCTGAGACGCTGCCGTTCTCGGACACCATGACCGCGTCGCCCCTCTTCCTCGGCCCGGCGACGGACACGGCGG
CGGCCGACCGCCCCGGCGGCGAGAGCAGCGGCCCCGCGGTGGACTTCCTCACGCTCTCCAAAGACGAGGAGCGGTTGCAG
GAAGAACCCCGAGGCGCCGCCGGCGAGGACGACGACGAGGACAACGACGAGATCGGGGAGGACATCGCGCGGCTCATGGC
GCTGCTCGGCTTGTCGCCGCCACGGCGCGGCCTCGAGGGCGGCGGCGGCGACGACGACAGCGGCGGGTGCGATTGCAGCG
GCGGCGAGGGGTTCTTGGCCAAGGTCGTCGGCGTGGTCGGGCCCAAGTGCGACAAGGAGAAGAGGAGGGTGGACGGCTGG
GTAGAGCATTACTTCAGCGGCGGCGAGTGCAGGGAGCCGGCGAGGCTGGCGCACCTGCTGCTCGCCAAGGCGGCGGCGTC
GTCGTCGTCGTCGTCCTGGGAGGGAGAAGGGCACCGGGGTGCTTCACCTTTTGCCTTCCCGGCCACCGTGAAGGAGTTCT
TGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23232.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis