Browse Element(s) Details


Os.10500.1.S1_at

Description gb:AK101630.1
DB_XREF= gi:32986839
TID=Os.10500.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10500 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033054N12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033054N12, full insert sequence.
FL= gb:AK101630.1 gb:AK059362.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3961011/11Exo70 exocyst complex subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39580NANA5+23156756..23157406Streptomyces cyclase/dehydrase family protein
LOC_Os05g39590Os.54212.1.S1_at11/115+23164500..23166848AP2 domain containing protein, expressed
LOC_Os05g39600Os.53362.1.S1_at11/115+23167929..23171197Sodium/hydrogen exchanger family protein, expressed
LOC_Os05g39600Os.53362.2.S1_at6/115+23167929..23171197Sodium/hydrogen exchanger family protein, expressed
LOC_Os05g39610Os.10500.1.S1_at11/115+23171743..23174288Exo70 exocyst complex subunit family protein, expressed
LOC_Os05g39620OsAffx.21171.3.S1_x_at4/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39620OsAffx.21171.5.S1_at3/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39620OsAffx.21171.5.S1_x_at3/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39620OsAffx.21171.4.S1_x_at2/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39620OsAffx.22711.4.S1_at1/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39630OsAffx.29284.1.S1_x_at1/115+23187528..23188130hypothetical protein
LOC_Os05g39640OsAffx.15029.1.S1_at11/115+23189008..23189486hypothetical protein
LOC_Os05g39650Os.27499.2.S1_a_at11/115+23190400..23193314phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os05g39650Os.23310.1.A1_s_at4/115+23190400..23193314phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os05g39650Os.23310.1.A1_x_at1/115+23190400..23193314phytanoyl-CoA dioxygenase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006904biological_processvesicle docking during exocytosis
GO:0000145cellular_componentexocyst
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10500.1.S1_at--879--3951Chr05:23172308..23172332 (25 bp)
CCGGATGTTTAATACCTACTTTCAG
LOC_Os05g39610
Os.10500.1.S1_at--1009--331Chr05:23172189..23172213 (25 bp)
ATACAGCCTTGATTTCTAGATTGAA
LOC_Os05g39610
Os.10500.1.S1_at--999--2651Chr05:23172153..23172177 (25 bp)
AAGCCAGGCATGACTTGTACATCAA
LOC_Os05g39610
Os.10500.1.S1_at--797--8271Chr05:23172107..23172131 (25 bp)
GGCATGCATCCAGCACTTGTTTGAA
LOC_Os05g39610
Os.10500.1.S1_at--481--8071Chr05:23172082..23172106 (25 bp)
GGAGCAGCTAAGTGATCAGTTGATC
LOC_Os05g39610
Os.10500.1.S1_at--779--9931Chr05:23172055..23172079 (25 bp)
TACGTTATGGTACTGGCGTGCTGCA
LOC_Os05g39610
Os.10500.1.S1_at--1027--9031Chr05:23172027..23172051 (25 bp)
TGCAGCTTCTACTACAGGGTTTGTG
LOC_Os05g39610
Os.10500.1.S1_at--415--7511Chr05:23172005..23172029 (25 bp)
GTGGAGTTCTATCATGGATCCTGGT
LOC_Os05g39610
Os.10500.1.S1_at--426--6371Chr05:23171989..23172013 (25 bp)
GATCCTGGTGAATATCTGCGTCCCA
LOC_Os05g39610
Os.10500.1.S1_at--469--471Chr05:23171976..23172000 (25 bp)
ATCTGCGTCCCATTATTGGTGATTT
LOC_Os05g39610
Os.10500.1.S1_at--450--51Chr05:23171928..23171952 (25 bp)
ATTGTTTGTATTTTGTCCTCCATGA
LOC_Os05g39610
Target Sequence 
CCGGATGTTTAATACCTACTTTCAGGAGATCTATGAAGTACAATCAGAATGGGTGATAGCAGATGAACAGCTGCGGGTGG
ATGTTAGGGCAGCAGTGGCNGAAGCTGTAATGCCAGTATATACAGCCTTGATTTCTAGATTGAAATCATCCCCCGAAGCC
AGGCATGACTTGTACATCAAATACACCCCAGAAGATGTTGAGGCATGCATCCAGCACTTGTTTGAAGGAGCAGCTAAGTG
ATCAGTTGATCAGTACGTTATGGTACTGGCGTGCTGCAGCCTGCAGCTTCTACTACAGGGTTTGTGGAGTTCTATCATGG
ATCCTGGTGAATATCTGCGTCCCATTATTGGTGATTTTCATAGCTNAACCTTTCATCCTCATTGTTTGTATTTTGTCCTC
CATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10500.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis