Browse Element(s) Details


Os.10504.1.S1_at

Description gb:AK067012.1
DB_XREF= gi:32977030
TID=Os.10504.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10504 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-308-F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013092A14, full insert sequence.
FL= gb:AK104247.1 gb:AK067012.1 gb:AK061738.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4354011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43510OsAffx.15086.1.S1_at11/115+25208048..25209745Pyridoxal-dependent decarboxylase conserved domain containing protein, expressed
LOC_Os05g43520Os.34745.1.A1_at11/115+25212558..25215866BSD domain containing protein, expressed
LOC_Os05g43530OsAffx.20285.2.S1_at11/115+25217581..25221292glycosyl transferase family 2 protein, putative, expressed
LOC_Os05g43530Os.15705.1.S1_x_at11/115+25217581..25221292glycosyl transferase family 2 protein, putative, expressed
LOC_Os05g43530OsAffx.20285.1.S1_x_at1/115+25217581..25221292glycosyl transferase family 2 protein, putative, expressed
LOC_Os05g43540Os.10504.1.S1_at11/115+25229534..25233108expressed protein
LOC_Os05g43550OsAffx.27292.1.S1_at11/115+25233838..25235136Eukaryotic aspartyl protease family protein
LOC_Os05g43560Os.17049.1.S1_at11/115+25238156..25247656expressed protein
LOC_Os05g43570Os.21326.1.S1_at11/115+25248678..25256568Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10504.1.S1_at--1113--10151Chr05:25232513..25232537 (25 bp)
TATCTTCTGGTTTGTGTTGTGCCTG
LOC_Os05g43540
Os.10504.1.S1_at--142--9191Chr05:25232532..25232556 (25 bp)
TGCCTGCCATACTGTTCGTGATGAA
LOC_Os05g43540
Os.10504.1.S1_at--207--7691Chr05:25232628..25232652 (25 bp)
GGGTATGCATGTACAGCCACGACAA
LOC_Os05g43540
Os.10504.1.S1_at--807--7031Chr05:25232664..25232688 (25 bp)
GTAAATTCACTCAGCAGGCCAGCAG
LOC_Os05g43540
Os.10504.1.S1_at--1153--3372Chr05:25232686..25232710 (25 bp)
CAGCCTATAGCTTCTCATTAGTCAC
LOC_Os05g43540
Os.10504.1.S1_at--1124--10651Chr05:25232812..25232836 (25 bp)
TTCCGCTATGGCTGTATGTTCTTAA
LOC_Os05g43540
Os.10504.1.S1_at--708--10191Chr05:25232894..25232918 (25 bp)
TATTTGCCCCAATTTCAGTCACATT
LOC_Os05g43540
Os.10504.1.S1_at--43--1571Chr05:25232946..25232970 (25 bp)
AGCTTTGGCCATCATTCCCAAGAAT
LOC_Os05g43540
Os.10504.1.S1_at--259--431Chr05:25232977..25233001 (25 bp)
ATCATCAACTTTTAGTCTCCCTGGA
LOC_Os05g43540
Os.10504.1.S1_at--1053--4291Chr05:25233010..25233034 (25 bp)
CCTTTCTTTAGATCTGGCTTCACAA
LOC_Os05g43540
Os.10504.1.S1_at--1069--4891Chr05:25233026..25233050 (25 bp)
GCTTCACAATGATGCCCGAGTTTTT
LOC_Os05g43540
Target Sequence 
TATCTTCTGGTTTGTGTTGTGCCTGCCATACTGTTCGTGATGAATATGATATGGTTTTCCAAGATCTTAAGGGGCCTCAA
GAAGACACTGGCCAAGAGGCATTGAGTGGGGCAAGGGGTATGCATGTACAGCCACGACAAACCACCTATCTGTAAATTCA
CTCAGCAGGCCAGCAGCCTATAGCTTCTCATTAGTCACGATGGCTAATCCTGGTAATATCAGCTTGGCCATTAAGATCCA
GATTTATGATTGAATGCCCAGCTTTTTATGCATGGATGATATATTAATTTGTATATATGTTCCGCTATGGCTGTATGTTC
TTAATACCCATCTTCTTTTTCTCGGTATAAATGATTATATCTTAGTTTTAACTTAAACAACTATTTGCCCCAATTTCAGT
CACATTGTCAACACATTGCTGTAATTTGCCATCAGCTTTGGCCATCATTCCCAAGAATAGTTTGATCATCAACTTTTAGT
CTCCCTGGACTAAACTGCCTTTCTTTAGATCTGGCTTCACAATGATGCCCGAGTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10504.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis