Browse Element(s) Details


Os.10509.1.S1_at

Description gb:AK119323.1
DB_XREF= gi:37988946
TID=Os.10509.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10509 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-108-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-131-A07, full insert sequence.
FL= gb:AK119323.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2165011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g21610Os.19506.1.S1_at4/114+12196416..12204390hypothetical protein
LOC_Os04g21610OsAffx.24469.1.S1_x_at1/114+12196416..12204390hypothetical protein
LOC_Os04g21610OsAffx.9807.1.A1_at1/114+12196416..12204390hypothetical protein
LOC_Os04g21620NANA4+12208506..12208871hypothetical protein
LOC_Os04g21640OsAffx.3848.1.S1_at10/114+12213538..12216719hypothetical protein
LOC_Os04g21640Os.16349.1.S1_at2/114+12213538..12216719hypothetical protein
LOC_Os04g21650Os.10509.1.S1_at11/114+12218212..12226554expressed protein
LOC_Os04g21650Os.10509.2.S1_x_at11/114+12218212..12226554expressed protein
LOC_Os04g21650Os.23945.1.A1_at11/114+12218212..12226554expressed protein
LOC_Os04g21650OsAffx.26326.1.S1_at2/114+12218212..12226554expressed protein
LOC_Os04g21660Os.53212.1.S1_at10/114+12227812..1223397826S protease regulatory subunit 6A homolog, putative, expressed
LOC_Os04g21670OsAffx.25936.1.S1_s_at7/114+12235357..12235920transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21670OsAffx.25936.7.S1_s_at5/114+12235357..12235920transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21680NANA4+12237661..12240933transposon protein, putative, unclassified
LOC_Os04g21690NANA4+12241721..12247641retrotransposon protein, putative, unclassified
LOC_Os04g21700NANA4+12248783..12250390transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10509.1.S1_at--1103--9971Chr04:12225884..12225908 (25 bp)
TACCATGTGGGAATCTTTGTGCGCA
LOC_Os04g21650
Os.10509.1.S1_at--664--4291Chr04:12225912..12225936 (25 bp)
CCTCAGCCTGCTTTGATGTAGTACA
LOC_Os04g21650
Os.10509.1.S1_at--669--5651Chr04:12226051..12226075 (25 bp)
GACAGAGCCAGGATCCGCGATTTTT
LOC_Os04g21650
Os.10509.1.S1_at--70--10371Chr04:12226074..12226098 (25 bp)
TTTTTCTCCAATGATCTCCACAAAG
LOC_Os04g21650
Os.10509.1.S1_at--386--2431Chr04:12226127..12226151 (25 bp)
AAAACGTGGTTGCTTCTCTGTGCTG
LOC_Os04g21650
Os.10509.1.S1_at--586--7291Chr04:12226146..12226170 (25 bp)
GTGCTGTTCCCATCGGTTAAACAAC
LOC_Os04g21650
Os.10509.1.S1_at--363--6711Chr04:12226268..12226292 (25 bp)
GTTCGTAACTTTGATCTACTGGCAA
LOC_Os04g21650
Os.10509.1.S1_at--151--3171Chr04:12226293..12226317 (25 bp)
AATTGCCCCATCGTGAAGCATAAAG
LOC_Os04g21650
Os.10509.1.S1_at--601--5531Chr04:12226336..12226360 (25 bp)
GAAACACAATAAGCCACTCCGCTGG
LOC_Os04g21650
Os.10509.1.S1_at--909--9291Chr04:12226353..12226377 (25 bp)
TCCGCTGGCTGATCCATATCGAATG
LOC_Os04g21650
Os.10509.1.S1_at--735--5391Chr04:12226382..12226406 (25 bp)
GAAGCATCCATAGCTCTGTACAATC
LOC_Os04g21650
Target Sequence 
TACCATGTGGGAATCTTTGTGCGCATGCCCTCAGCCTGCTTTGATGTAGTACAATATTTTTAAGGACAGAGCCAGGATCC
GCGATTTTTTTTCTCCAATGATCTCCACAAAGTGCAAACATGAGGAAGACACGATTCTGCAAAACGTGGTTGCTTCTCTG
TGCTGTTCCCATCGGTTAAACAACAATTTTGTTCGTAACTTTGATCTACTGGCAAAATTGCCCCATCGTGAAGCATAAAG
CATCATTCATGTATAGAAGAAACACAATAAGCCACTCCGCTGGCTGATCCATATCGAATGATATGAAGCATCCATAGCTC
TGTACAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10509.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis