Browse Element(s) Details


OsAffx.9807.1.A1_at

Description tigr:9636.m04112
TID=OsAffx.9807.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g216101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g21570OsAffx.26086.1.S1_at11/114+12172341..12173177Fasciclin-like arabinogalactan protein 10 precursor, putative, expressed
LOC_Os04g21580Os.5266.1.S1_at11/114+12180687..12181785retrotransposon protein, putative, unclassified, expressed
LOC_Os04g21590Os.29775.1.S1_at10/114+12187160..12188617PB1 domain containing protein, expressed
LOC_Os04g21590OsAffx.13908.1.S1_x_at1/114+12187160..12188617PB1 domain containing protein, expressed
LOC_Os04g21600Os.52131.1.S1_at11/114+12188922..12193009expressed protein
LOC_Os04g21610Os.19506.1.S1_at4/114+12196416..12204390hypothetical protein
LOC_Os04g21610OsAffx.24469.1.S1_x_at1/114+12196416..12204390hypothetical protein
LOC_Os04g21610OsAffx.9807.1.A1_at1/114+12196416..12204390hypothetical protein
LOC_Os04g21620NANA4+12208506..12208871hypothetical protein
LOC_Os04g21640OsAffx.3848.1.S1_at10/114+12213538..12216719hypothetical protein
LOC_Os04g21640Os.16349.1.S1_at2/114+12213538..12216719hypothetical protein
LOC_Os04g21650Os.10509.1.S1_at11/114+12218212..12226554expressed protein
LOC_Os04g21650Os.10509.2.S1_x_at11/114+12218212..12226554expressed protein
LOC_Os04g21650Os.23945.1.A1_at11/114+12218212..12226554expressed protein
LOC_Os04g21650OsAffx.26326.1.S1_at2/114+12218212..12226554expressed protein
LOC_Os04g21660Os.53212.1.S1_at10/114+12227812..1223397826S protease regulatory subunit 6A homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9807.1.A1_at--675--1391Chr08:25575146..25575170 (25 bp)
AGACGAAGCGGGACTGCGAGCGAGA
NONE
OsAffx.9807.1.A1_at--713--991Chr08:25574973..25574997 (25 bp)
AGGAGGCCTCGCGAATGTGGATATG
NONE
OsAffx.9807.1.A1_at--58--1331Chr08:25574889..25574913 (25 bp)
AGAGGCAGATGTGGCCGTTGCCATC
NONE
OsAffx.9807.1.A1_at--760--7691Chr08:25574783..25574807 (25 bp)
GGGTAATTTGGTCCTAGATAGTATT
NONE
OsAffx.9807.1.A1_at--689--6875Chr09:21246112..21246136 (25 bp)
GTATTTTAGCGTGTAACCATGTGTT
NONE
OsAffx.9807.1.A1_at--978--2631Chr08:25574749..25574773 (25 bp)
AACCATGTGTTGATAGTGGCATTTG
NONE
OsAffx.9807.1.A1_at--232--8491Chr08:25574733..25574757 (25 bp)
TGGCATTTGGGCGAAAACCACTTTT
NONE
OsAffx.9807.1.A1_at--267--5532Chr09:16826615..16826703 (24 bp)
GAAAACCACTTTTGACGATGGCACA
NONE
OsAffx.9807.1.A1_at--948--7071Chr08:25574694..25574718 (25 bp)
GTCAATTTTCTCGTTCAATTCACTA
NONE
OsAffx.9807.1.A1_at--58--9751Chr08:25574680..25574704 (25 bp)
TCAATTCACTATAGAGCTCCAGCCT
NONE
OsAffx.9807.1.A1_at--943--1351Chr08:25574668..25574692 (25 bp)
AGAGCTCCAGCCTAACAATTTCACA
NONE
Target Sequence 
AGACGAAGCGGGACTGCGAGCGAGAGGAGGATCCCGAGGAGGAGCGCGAGGCGGAGCGGCCGCGGCGCGGCTACGACATC
GTCTCCGGCTGCTACTGCCCGTGGCGCTCGCACTCCCGCTCGCGCCGTCGAGGTGGAGGCTGGCGTGGAGCCTGCCGGCG
GCCGAGGCGCGAGAGGAGGCCTCGCGAATGTGGATATGGGGCTCGGGCTCGGGCCCAGGCGTGGGGTTTTGGCGCCGAAC
GCCGCGGCGGAGGAGGCAGAGGCAGATGTGGCCGTTGCCATCCTGCCCACGCCGCTGCCGATGGTGGCATTGTTGCCGCC
GGCGAGAGCTAATGATGTTGGAGGGAGGAAGAAGAGGAGAGGAGGGTAATTTGGTCCTAGATAGTATTTTAGCGTGTAAC
CATGTGTTGATAGTGGCATTTGGGCGAAAACCACTTTTGACGATGGCACAATGTCAATTTTCTCGTTCAATTCACTATAG
AGCTCCAGCCTAACAATTTCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9807.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis