Browse Element(s) Details


OsAffx.26086.1.S1_at

Description tigr:9632.m01983
TID=OsAffx.26086.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=8734-7967
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2157011/11Fasciclin-like arabinogalactan protein 10 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g21520OsAffx.23366.1.S1_at1/114+12146637..12148267transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21530Os.47463.1.S1_x_at6/114+12150855..12152208transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21530Os.14491.2.S1_x_at4/114+12150855..12152208transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21544NANA4+12153190..12153941NA
LOC_Os04g21560OsAffx.22947.1.S1_x_at11/114+12160207..12164784retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g21560OsAffx.22947.2.S1_x_at6/114+12160207..12164784retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g21560OsAffx.22947.3.S1_x_at6/114+12160207..12164784retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g21560OsAffx.22947.5.S1_x_at3/114+12160207..12164784retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g21570OsAffx.26086.1.S1_at11/114+12172341..12173177Fasciclin-like arabinogalactan protein 10 precursor, putative, expressed
LOC_Os04g21580Os.5266.1.S1_at11/114+12180687..12181785retrotransposon protein, putative, unclassified, expressed
LOC_Os04g21590Os.29775.1.S1_at10/114+12187160..12188617PB1 domain containing protein, expressed
LOC_Os04g21590OsAffx.13908.1.S1_x_at1/114+12187160..12188617PB1 domain containing protein, expressed
LOC_Os04g21600Os.52131.1.S1_at11/114+12188922..12193009expressed protein
LOC_Os04g21610Os.19506.1.S1_at4/114+12196416..12204390hypothetical protein
LOC_Os04g21610OsAffx.24469.1.S1_x_at1/114+12196416..12204390hypothetical protein
LOC_Os04g21610OsAffx.9807.1.A1_at1/114+12196416..12204390hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26086.1.S1_at--277--7091Chr04:12172638..12172662 (25 bp)
GTCAAGCTGTACAGCCTCAAGGCGA
LOC_Os04g21570
OsAffx.26086.1.S1_at--1155--3871Chr04:12172644..12172668 (25 bp)
CTGTACAGCCTCAAGGCGAAGACGG
LOC_Os04g21570
OsAffx.26086.1.S1_at--243--7591Chr04:12172725..12172749 (25 bp)
GGGCTCGTGAAGTACACCCAGGTCG
LOC_Os04g21570
OsAffx.26086.1.S1_at--608--8971Chr04:12172732..12172756 (25 bp)
TGAAGTACACCCAGGTCGCCGACGA
LOC_Os04g21570
OsAffx.26086.1.S1_at--740--4151Chr04:12172789..12172813 (25 bp)
CGCCGATCGGGTCGCAGCTGGTGAA
LOC_Os04g21570
OsAffx.26086.1.S1_at--535--3391Chr04:12172803..12172827 (25 bp)
CAGCTGGTGAAGGTCGTGGCGTGCC
LOC_Os04g21570
OsAffx.26086.1.S1_at--722--2211Chr04:12172834..12172858 (25 bp)
ACAACCTCTCCGTCATGCAGGTCAG
LOC_Os04g21570
OsAffx.26086.1.S1_at--487--9451Chr04:12172953..12172977 (25 bp)
TCGGCCTCCTCGATGACGGACTACG
LOC_Os04g21570
OsAffx.26086.1.S1_at--82--811Chr04:12173008..12173032 (25 bp)
ATGGTCCGGGAATTGTGGATACGCC
LOC_Os04g21570
OsAffx.26086.1.S1_at--472--5191Chr04:12173017..12173041 (25 bp)
GAATTGTGGATACGCCGCCGACGAA
LOC_Os04g21570
OsAffx.26086.1.S1_at--281--531Chr04:12173048..12173072 (25 bp)
ATCGCCGTCGACAAACGGGACAAGT
LOC_Os04g21570
Target Sequence 
GTCAAGCTGTACAGCCTCAAGGCGAAGACGGCGCTCCTCCCCACGCTGCTCCGGCCGACCGCCGCCGGCGGCGGCGGCGG
AGGCGTGGGGCTCGTGAAGTACACCCAGGTCGCCGACGACCAGATGGCGTTCGGCTCCGGCGAGCCCGGCGCGCCGATCG
GGTCGCAGCTGGTGAAGGTCGTGGCGTGCCGGCCGTACAACCTCTCCGTCATGCAGGTCAGCGCCCCCATCGTGGCGCCG
AGCTTGGGCGGCCCCTCTTCCGGCGGCGGCACGCCGCCGTCTTCTCCGGCGACGGCCAAGAGCGCCGACGACGCGTCGGC
CTCCTCGATGACGGACTACGACGACGATCCCATCGCTCCGGCGGCGGTTGATGGTCCGGGAATTGTGGATACGCCGCCGA
CGAAGACGACATCGCCGTCGACAAACGGGACAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26086.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis