Browse Element(s) Details


Os.5266.1.S1_at

Description gb:AK063831.1
DB_XREF= gi:32973849
TID=Os.5266.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5266 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-122-B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-122-B02, full insert sequence.
FL= gb:AK063831.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2158011/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g21560OsAffx.22947.1.S1_x_at11/114+12160207..12164784retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g21560OsAffx.22947.2.S1_x_at6/114+12160207..12164784retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g21560OsAffx.22947.3.S1_x_at6/114+12160207..12164784retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g21560OsAffx.22947.5.S1_x_at3/114+12160207..12164784retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g21570OsAffx.26086.1.S1_at11/114+12172341..12173177Fasciclin-like arabinogalactan protein 10 precursor, putative, expressed
LOC_Os04g21580Os.5266.1.S1_at11/114+12180687..12181785retrotransposon protein, putative, unclassified, expressed
LOC_Os04g21590Os.29775.1.S1_at10/114+12187160..12188617PB1 domain containing protein, expressed
LOC_Os04g21590OsAffx.13908.1.S1_x_at1/114+12187160..12188617PB1 domain containing protein, expressed
LOC_Os04g21600Os.52131.1.S1_at11/114+12188922..12193009expressed protein
LOC_Os04g21610Os.19506.1.S1_at4/114+12196416..12204390hypothetical protein
LOC_Os04g21610OsAffx.24469.1.S1_x_at1/114+12196416..12204390hypothetical protein
LOC_Os04g21610OsAffx.9807.1.A1_at1/114+12196416..12204390hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5266.1.S1_at--610--5591Chr04:12181256..12181280 (25 bp)
GAAATCTGCTACTGGCTTTACAGGA
LOC_Os04g21580
Os.5266.1.S1_at--309--511Chr04:12181211..12181235 (25 bp)
ATCGTCTATCTCTGCCTTGCAAGTT
LOC_Os04g21580
Os.5266.1.S1_at--556--9011Chr04:12181194..12181218 (25 bp)
TGCAAGTTCCTTGGCGCATTCTGGA
LOC_Os04g21580
Os.5266.1.S1_at--353--4951Chr04:12181179..12181203 (25 bp)
GCATTCTGGACAGGCGGCTTGCTAA
LOC_Os04g21580
Os.5266.1.S1_at--933--7691Chr04:12181151..12181175 (25 bp)
GGGTAATTCTACTATCTCTCAAGTT
LOC_Os04g21580
Os.5266.1.S1_at--824--6791Chr04:12181129..12181153 (25 bp)
GTTTTGGTGCAGTGGTCTGAGTCCC
LOC_Os04g21580
Os.5266.1.S1_at--1039--1471Chr04:12181073..12181097 (25 bp)
AGAATTGCATGCTCGATTTCCTGCT
LOC_Os04g21580
Os.5266.1.S1_at--608--8012Chr04:12186139..12186163 (25 bp)
GGAGGAGGACGTCCAGACTTCTCAA
NONE
Os.5266.1.S1_at--687--472Chr04:12186108..12186132 (25 bp)
ATCTCCACAGGCAATGGTCATCGGC
NONE
Os.5266.1.S1_at--353--4632Chr04:12186073..12186097 (25 bp)
GCGTAGGCCCAACCCAAGAGTGTTA
NONE
Os.5266.1.S1_at--713--8152Chr04:12185895..12185919 (25 bp)
GGAAATACCACATAGTTGCCACAAT
NONE
Target Sequence 
GAAATCTGCTACTGGCTTTACAGGACATGTTCAGTCTCATCTGCCATCGTCTATCTCTGCCTTGCAAGTTCCTTGGCGCA
TTCTGGACAGGCGGCTTGCTAAGAAGGGTAATTCTACTATCTCTCAAGTTTTGGTGCAGTGGTCTGAGTCCCCTCCAGAA
GATGCCACTTGGGAAGACTATGAAGAATTGCATGCTCGATTTCCTGCTGCATTGGCTTGGGGGCAAGCCAATTCTCAAGG
GGTGGGGCTTGTCAGGGACTCTCCACTGTCNNCTGTTGAGGGTGGTGCCATTGGCGGGAAGGATCTGAATGCAGAAGAGG
AGGAGGACGTCCAGACTTCTCAAAGCGACATCTCCACAGGCAATGGTCATCGGCCGGTTCGGGAGCGTAGGCCCAACCCA
AGAGTGTTAGGCCCTGAATGGGTGGCGTAAGACACCNAGCTCGCCTGTGAGCTGTCACGTGAGGGAGAGGGATGTATTAA
ATCAAACGATGAACACTTGTATGAACGATGAATTGGCAACTGGAGGCGTAGGCGGCGGCGGCTCGATCCTGTCGGATCTG
AGAGGAAATACCACATAGTTGCCACAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5266.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis