Browse Element(s) Details


Os.23945.1.A1_at

Description gb:CA760909
DB_XREF= gi:25804948
DB_XREF=BR060008B20B09.ab1
CLONE=BR060008B20B09.ab1
TID=Os.23945.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.23945 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2165011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g21610Os.19506.1.S1_at4/114+12196416..12204390hypothetical protein
LOC_Os04g21610OsAffx.24469.1.S1_x_at1/114+12196416..12204390hypothetical protein
LOC_Os04g21610OsAffx.9807.1.A1_at1/114+12196416..12204390hypothetical protein
LOC_Os04g21620NANA4+12208506..12208871hypothetical protein
LOC_Os04g21640OsAffx.3848.1.S1_at10/114+12213538..12216719hypothetical protein
LOC_Os04g21640Os.16349.1.S1_at2/114+12213538..12216719hypothetical protein
LOC_Os04g21650Os.10509.1.S1_at11/114+12218212..12226554expressed protein
LOC_Os04g21650Os.10509.2.S1_x_at11/114+12218212..12226554expressed protein
LOC_Os04g21650Os.23945.1.A1_at11/114+12218212..12226554expressed protein
LOC_Os04g21650OsAffx.26326.1.S1_at2/114+12218212..12226554expressed protein
LOC_Os04g21660Os.53212.1.S1_at10/114+12227812..1223397826S protease regulatory subunit 6A homolog, putative, expressed
LOC_Os04g21670OsAffx.25936.1.S1_s_at7/114+12235357..12235920transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21670OsAffx.25936.7.S1_s_at5/114+12235357..12235920transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21680NANA4+12237661..12240933transposon protein, putative, unclassified
LOC_Os04g21690NANA4+12241721..12247641retrotransposon protein, putative, unclassified
LOC_Os04g21700NANA4+12248783..12250390transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23945.1.A1_at--825--771Chr04:12224252..12224276 (25 bp)
ATGTGATCGGACTGTGCATGTTGGT
LOC_Os04g21650
Os.23945.1.A1_at--710--3951Chr04:12224259..12224283 (25 bp)
CGGACTGTGCATGTTGGTGCACTCC
LOC_Os04g21650
Os.23945.1.A1_at--591--7831Chr04:12224294..12224318 (25 bp)
GGTACTGTTTGGCTTCCATGTAGGT
LOC_Os04g21650
Os.23945.1.A1_at--267--8771Chr04:12224299..12224323 (25 bp)
TGTTTGGCTTCCATGTAGGTGGTGT
LOC_Os04g21650
Os.23945.1.A1_at--613--7611Chr04:12224325..12224349 (25 bp)
GGGCAATATCGGACCTCTAGTGAAC
LOC_Os04g21650
Os.23945.1.A1_at--1087--3811Chr04:12224334..12224358 (25 bp)
CGGACCTCTAGTGAACGGTTTAGAT
LOC_Os04g21650
Os.23945.1.A1_at--1098--10391Chr04:12224363..12224387 (25 bp)
TTAGGAACCTTAAACTGTAGATTGA
LOC_Os04g21650
Os.23945.1.A1_at--30--2711Chr04:12224407..12224431 (25 bp)
AAGCAGGTGGACAGGTTAGCGACAT
LOC_Os04g21650
Os.23945.1.A1_at--988--4591Chr04:12224425..12224449 (25 bp)
GCGACATGTAGTGTATTTTACTCAT
LOC_Os04g21650
Os.23945.1.A1_at--295--1171Chr04:12224569..12224593 (25 bp)
AGTCATGCTTTAAGAACCTTTAATG
LOC_Os04g21650
Os.23945.1.A1_at--627--3031Chr04:12224650..12224674 (25 bp)
AATCGTCAAACATATCTCAAAAGTC
LOC_Os04g21650
Target Sequence 
ATGTGATCGGACTGTGCATGTTGGTGCACTCCNGTCTATCCNGGTACTGTTTGGCTTCCATGTAGGTGGTGTGGGGCAAT
ATCGGACCTCTAGTGAACGGTTTAGATAGGTTTAGGAACCTTAAACTGTAGATTGAAACTTCATGNACCTAAGTGAAGCA
GGTGGACAGGTTAGCGACATGTAGTGTATTTTACTCATATATTCATCTTCTATTTAATACTACCTCTGNTTTTTTTTATA
TATGACGCCATTAACTTTTAACAAACGTTTGACNNTTCGTCTTATTCAAAATATTTGTGCAAACATNAAAAAAATATAAG
TCATGCTTTAAGAACCTTTAATGATAAATCNNNTCNCAAGAAAATAAATGATAATTACNTGAATTTTTTGAATAAGACAA
ATCGTCAAACATATCTCAAAAGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23945.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis