Browse Element(s) Details


Os.10524.1.S1_x_at

Description gb:AK059747.1
DB_XREF= gi:32969765
TID=Os.10524.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10524 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-206-A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-203-A02, full insert sequence.
FL= gb:AK059747.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0307010/11FHA domain containing protein, expressed
LOC_Os11g033902/11FHA domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03030Os.15801.1.S1_x_at3/1112+1129909..1132442hypothetical protein
LOC_Os12g03040Os.35020.1.S1_at7/1112+1138155..1140227NAC domain transcription factor, putative, expressed
LOC_Os12g03050OsAffx.31559.1.S1_at11/1112+1146065..1147587No apical meristem protein, expressed
LOC_Os12g03060Os.37912.1.S1_at11/1112+1150632..1154729expressed protein
LOC_Os12g03070Os.10524.2.S1_at11/1112+1155635..1157563FHA domain containing protein, expressed
LOC_Os12g03070Os.10524.1.S1_x_at10/1112+1155635..1157563FHA domain containing protein, expressed
LOC_Os12g03080Os.50512.1.S1_at10/1112+1157566..1164277NB-ARC domain containing protein, expressed
LOC_Os12g03090Os.9193.1.S1_s_at11/1112+1168638..116946040S ribosomal protein S16, putative, expressed
LOC_Os12g03090Os.37737.1.S1_at11/1112+1168638..116946040S ribosomal protein S16, putative, expressed
LOC_Os12g03100Os.15794.1.S1_at11/1112+1171749..1174786secondary cell wall-related glycosyltransferase family 47, putative, expressed
LOC_Os12g03110Os.16784.1.S1_at8/1112+1179462..1180200ZF-HD protein dimerisation region containing protein
LOC_Os12g03120OsAffx.19462.1.S1_at11/1112+1182405..1182748hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10524.1.S1_x_at--793--8352Chr12:1156364..1156385 (22 bp)
GGCGGCTTCCAGATAGCATCCGAGG
LOC_Os12g03070
Os.10524.1.S1_x_at--1065--3331NONE
CATCCGAGGCGGTGGTAACAGACCT
NONE
Os.10524.1.S1_x_at--582--6012Chr12:1156760..1156784 (25 bp)
GAGAGCACGAATGGCACCTACATCA
LOC_Os12g03070
Os.10524.1.S1_x_at--254--6971Chr12:1156830..1156995 (25 bp)
GTAGCCTCCTCATTTTTGGCGACAT
LOC_Os12g03070
Os.10524.1.S1_x_at--802--8431Chr12:1157002..1157026 (25 bp)
GGCCATGTTCCGTGTTTCCAAGATG
LOC_Os12g03070
Os.10524.1.S1_x_at--1026--10491Chr12:1157113..1157137 (25 bp)
TTAATTAGCGACCTCCATGTGCTGC
LOC_Os12g03070
Os.10524.1.S1_x_at--1073--5471Chr12:1157163..1157187 (25 bp)
GAACTAGCTTATCAGTGCTCCCAAA
LOC_Os12g03070
Os.10524.1.S1_x_at--1064--251Chr12:1157204..1157228 (25 bp)
ATATGTTACGATCGACAGTCTCCCT
LOC_Os12g03070
Os.10524.1.S1_x_at--440--8091Chr12:1157303..1157327 (25 bp)
GGAGCGCACATAATGGTAGCCCCGT
LOC_Os12g03070
Os.10524.1.S1_x_at--110--7851Chr12:1157317..1157341 (25 bp)
GGTAGCCCCGTGATCAACTTAAAAT
LOC_Os12g03070
Os.10524.1.S1_x_at--68--6971Chr12:1157387..1157411 (25 bp)
GTAGCATGCCAACTGCGAGACTGCA
LOC_Os12g03070
Target Sequence 
GGCGGCTTCCAGATAGCATCCGAGGCGGTGGTAACAGACCTGGAGAGCACGAATGGCACCTACATCAACGAGAGGCGCCT
CAGCCCGGGTTTCCCCACTCCCATCGACCCCGGTAGCCTCCTCATTTTTGGCGACATCCACCTGGCCATGTTCCGTGTTT
CCAAGATGGTCGTGGATGTGCCCAGTGACGCCAGTGGAGCTGAGCAGGAAGCAGCTGAGACGGCTCAAGTATCAGCTGCA
GCCCAACAGACCAATTAATTAGCGACCTCCATGTGCTGCTTGATGCATCAAGACAGCTCAAGAAGAACTAGCTTATCAGT
GCTCCCAAAGGCCGACATGAAGTGCATATGTTACGATCGACAGTCTCCCTTGCAAATAAGCGCATACATATGTTGTGTGA
TAGGAATGTCACAGAGCAACAACTCTGGATATTAATTAATAGAGGGAGCGCACATAATGGTAGCCCCGTGATCAACTTAA
AATGCATTTATCAAGTACCAAAGATGCCAATATTACAAGTACAAAAGTGTAGCATGCCAACTGCGAGACTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10524.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis