Browse Element(s) Details


Os.37912.1.S1_at

Description gb:AK061862.1
DB_XREF= gi:32971880
TID=Os.37912.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.37912 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-040-G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-040-G12, full insert sequence.
FL= gb:AK061862.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0306011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03010NANA12+1119567..1125722retrotransposon protein, putative, unclassified
LOC_Os12g03020Os.14491.2.S1_x_at2/1112+1128219..1129207transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g03020Os.47463.1.S1_x_at1/1112+1128219..1129207transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g03030Os.15801.1.S1_x_at3/1112+1129909..1132442hypothetical protein
LOC_Os12g03040Os.35020.1.S1_at7/1112+1138155..1140227NAC domain transcription factor, putative, expressed
LOC_Os12g03050OsAffx.31559.1.S1_at11/1112+1146065..1147587No apical meristem protein, expressed
LOC_Os12g03060Os.37912.1.S1_at11/1112+1150632..1154729expressed protein
LOC_Os12g03070Os.10524.2.S1_at11/1112+1155635..1157563FHA domain containing protein, expressed
LOC_Os12g03070Os.10524.1.S1_x_at10/1112+1155635..1157563FHA domain containing protein, expressed
LOC_Os12g03080Os.50512.1.S1_at10/1112+1157566..1164277NB-ARC domain containing protein, expressed
LOC_Os12g03090Os.9193.1.S1_s_at11/1112+1168638..116946040S ribosomal protein S16, putative, expressed
LOC_Os12g03090Os.37737.1.S1_at11/1112+1168638..116946040S ribosomal protein S16, putative, expressed
LOC_Os12g03100Os.15794.1.S1_at11/1112+1171749..1174786secondary cell wall-related glycosyltransferase family 47, putative, expressed
LOC_Os12g03110Os.16784.1.S1_at8/1112+1179462..1180200ZF-HD protein dimerisation region containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37912.1.S1_at--760--10031Chr12:1151350..1151374 (25 bp)
TAGAGAGCCCTTCAAACCTGCCGTT
LOC_Os12g03060
Os.37912.1.S1_at--336--3051Chr12:1150933..1150957 (25 bp)
AATCGTAAGCCCATTTTTAAGCAGA
LOC_Os12g03060
Os.37912.1.S1_at--321--1671Chr12:1150926..1150950 (25 bp)
AGCCCATTTTTAAGCAGATCTGAAT
LOC_Os12g03060
Os.37912.1.S1_at--549--1611Chr12:1150866..1150890 (25 bp)
AGCTGATGTAGCAGGTCTGTACTGT
LOC_Os12g03060
Os.37912.1.S1_at--1064--6951Chr12:1150859..1150883 (25 bp)
GTAGCAGGTCTGTACTGTGAATATA
LOC_Os12g03060
Os.37912.1.S1_at--265--6791Chr12:1150834..1150858 (25 bp)
GTTAGTTTGCTACTTATTGCCTTAT
LOC_Os12g03060
Os.37912.1.S1_at--1000--2371Chr12:1150751..1150775 (25 bp)
AAACGTACACGTGCAAGGCCTGATT
LOC_Os12g03060
Os.37912.1.S1_at--674--3951Chr12:1150742..1150766 (25 bp)
CGTGCAAGGCCTGATTTGTACCATA
LOC_Os12g03060
Os.37912.1.S1_at--354--9791Chr12:1150687..1150711 (25 bp)
TAAGCTGGAATTAAAACCTGTTTTG
LOC_Os12g03060
Os.37912.1.S1_at--526--2631Chr12:1150673..1150697 (25 bp)
AACCTGTTTTGGAATAAGATGTCAC
LOC_Os12g03060
Os.37912.1.S1_at--381--751Chr12:1150655..1150679 (25 bp)
ATGTCACAGTTCATCGAATAAAACC
LOC_Os12g03060
Target Sequence 
TAGAGAGCCCTTCAAACCTGCCGTTAGGCAGGTACCTCGCAGAGAAGACTAATACTACTAAACCCGGCCGTGGAAAATGT
GATGGGGAGTGCTTAGTAAAATCAACTCTGCTAGAAGGAAGCTTTGTTGGAATAGTGCTGCTAATCATCTTGATATCAGG
ACTCAAATGTATGATGGGAATTGATACCCCATCAAAGTTCGATGCTCCCCCGGAATCGTAAGCCCATTTTTAAGCAGATC
TGAATGGAAACTCAAGGCAAACACGAGGGGAAAATTGAATAGCTGATGTAGCAGGTCTGTACTGTGAATATAGTTAGTTT
GCTACTTATTGCCTTATGTATTTTAATGAGCCAACTGCAATTTGCAGTCAATTTTTGGTGGAATATTACATTTCAAAACG
TACACGTGCAAGGCCTGATTTGTACCATATAACACTGCCTCTAGTGTTTGCTGTGTGAATAAGCTGGAATTAAAACCTGT
TTTGGAATAAGATGTCACAGTTCATCGAATAAAACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37912.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis