Browse Element(s) Details


OsAffx.31559.1.S1_at

Description tigr:9640.m00213
TID=OsAffx.31559.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0305011/11No apical meristem protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03010NANA12+1119567..1125722retrotransposon protein, putative, unclassified
LOC_Os12g03020Os.14491.2.S1_x_at2/1112+1128219..1129207transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g03020Os.47463.1.S1_x_at1/1112+1128219..1129207transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g03030Os.15801.1.S1_x_at3/1112+1129909..1132442hypothetical protein
LOC_Os12g03040Os.35020.1.S1_at7/1112+1138155..1140227NAC domain transcription factor, putative, expressed
LOC_Os12g03050OsAffx.31559.1.S1_at11/1112+1146065..1147587No apical meristem protein, expressed
LOC_Os12g03060Os.37912.1.S1_at11/1112+1150632..1154729expressed protein
LOC_Os12g03070Os.10524.2.S1_at11/1112+1155635..1157563FHA domain containing protein, expressed
LOC_Os12g03070Os.10524.1.S1_x_at10/1112+1155635..1157563FHA domain containing protein, expressed
LOC_Os12g03080Os.50512.1.S1_at10/1112+1157566..1164277NB-ARC domain containing protein, expressed
LOC_Os12g03090Os.9193.1.S1_s_at11/1112+1168638..116946040S ribosomal protein S16, putative, expressed
LOC_Os12g03090Os.37737.1.S1_at11/1112+1168638..116946040S ribosomal protein S16, putative, expressed
LOC_Os12g03100Os.15794.1.S1_at11/1112+1171749..1174786secondary cell wall-related glycosyltransferase family 47, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009790biological_processembryonic development
GO:0009908biological_processflower development
GO:0010014biological_processmeristem initiation
GO:0010072biological_processprimary shoot apical meristem specification
GO:0048467biological_processgynoecium development
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31559.1.S1_at--1036--1511Chr12:1146856..1146880 (25 bp)
AGCAGCAACCACAGTATGCAGCCGT
LOC_Os12g03050
OsAffx.31559.1.S1_at--319--10131Chr12:1146870..1146894 (25 bp)
TATGCAGCCGTGGATCAGTACTCTG
LOC_Os12g03050
OsAffx.31559.1.S1_at--728--3271Chr12:1146905..1146929 (25 bp)
CAACAGCGGCAGCTCCGTCGTTCAA
LOC_Os12g03050
OsAffx.31559.1.S1_at--103--6311Chr12:1146951..1146975 (25 bp)
GATGACTTCTTTCAGCTAGACGACA
LOC_Os12g03050
OsAffx.31559.1.S1_at--371--1851Chr12:1146970..1146994 (25 bp)
ACGACATCATTGACCCCAGCATCTA
LOC_Os12g03050
OsAffx.31559.1.S1_at--375--4971Chr12:1146988..1147012 (25 bp)
GCATCTACTTCGTCAGCAACTCTTC
LOC_Os12g03050
OsAffx.31559.1.S1_at--409--9951Chr12:1147070..1147094 (25 bp)
TACGACGACGACTAATACTACTGCC
LOC_Os12g03050
OsAffx.31559.1.S1_at--399--331Chr12:1147084..1147108 (25 bp)
ATACTACTGCCGTTAGCTTCCAGCA
LOC_Os12g03050
OsAffx.31559.1.S1_at--303--2991Chr12:1147293..1147317 (25 bp)
AATGTCATTGCTGTCCCGAATTTTG
LOC_Os12g03050
OsAffx.31559.1.S1_at--425--5211Chr12:1147310..1147334 (25 bp)
GAATTTTGGTACTCTACTGCCGAGC
LOC_Os12g03050
OsAffx.31559.1.S1_at--74--1551Chr12:1147342..1147366 (25 bp)
AGCTGAAGGGTTTATCGAAGTCGGC
LOC_Os12g03050
Target Sequence 
AGCAGCAACCACAGTATGCAGCCGTGGATCAGTACTCTGCCGAAACCCCCAACAGCGGCAGCTCCGTCGTTCAAGCCGGC
GACATCGACGGCGGCGATGACTTCTTTCAGCTAGACGACATCATTGACCCCAGCATCTACTTCGTCAGCAACTCTTCCAA
CATCTTGTCGGCGCCGCCCAACAACAACAACGCGGTTTATTCCGTTTCTGCAAGTACGACGACGACTAATACTACTGCCG
TTAGCTTCCAGCAGCAGCCAAACTACTACAGCTTGATCAACAAAAGCAGCAGCAGCAGCAGCAGCAACTATAGTGCTCCT
CTGCAGCAGCACGTCTCTTCTTGGAATATTACGCCTGGAGCTGGAGGAGCCCATGGAATTGGAAGCAGCTACTACAACTT
GCAGCAGCAGCAGGCAGCAATGGTGAAAGCCCTAGAAAATGTCATTGCTGTCCCGAATTTTGGTACTCTACTGCCGAGCA
GCAACAAGCTGAAGGGTTTATCGAAGTCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31559.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis