Browse Element(s) Details


Os.10527.1.S1_a_at

Description gb:AK070145.1
DB_XREF= gi:32980169
TID=Os.10527.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10527 (NCBI UniGene Cluster)
UG_TITLE=Guanine nucleotide-exchange protein GEP2 (GEP2) mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023042O16, full insert sequence.
FL= gb:AK102770.1 gb:AK119229.1 gb:AK070145.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1426011/11Sec7 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14240OsAffx.12855.1.S1_at11/113+7716407..7717328NA
LOC_Os03g14250Os.13708.1.S1_at11/113+7720007..7728422expressed protein
LOC_Os03g14260Os.10527.1.S1_a_at11/113+7733755..7742718Sec7 domain containing protein, expressed
LOC_Os03g14260Os.10527.1.S2_a_at11/113+7733755..7742718Sec7 domain containing protein, expressed
LOC_Os03g14260Os.10527.1.S3_a_at11/113+7733755..7742718Sec7 domain containing protein, expressed
LOC_Os03g14260Os.14713.1.S1_at1/113+7733755..7742718Sec7 domain containing protein, expressed
LOC_Os03g14270OsAffx.18167.2.S1_at11/113+7746115..7747754LOB domain protein 18, putative
LOC_Os03g14280Os.6658.1.S1_at10/113+7752775..7758918Clp amino terminal domain containing protein, expressed
LOC_Os03g14290Os.47951.1.S1_at11/113+7761510..7763848expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005085molecular_functionguanyl-nucleotide exchange factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10527.1.S1_a_at--639--5351Chr03:7741579..7741603 (25 bp)
GAAGAGACGCTTTCTTGGTTTTCCG
LOC_Os03g14260
Os.10527.1.S1_a_at--98--51Chr03:7741551..7741575 (25 bp)
ATTGTGCAAGCTCTCCATGAAGACA
LOC_Os03g14260
Os.10527.1.S1_a_at--191--9231Chr03:7741512..7741536 (25 bp)
TCCAGCTGATCCCATTGTGATGCGT
LOC_Os03g14260
Os.10527.1.S1_a_at--787--1291Chr03:7741483..7741507 (25 bp)
AGATCCTTGCTCTTGAACTTCTCAA
LOC_Os03g14260
Os.10527.1.S1_a_at--921--10351Chr03:7741127..7741456 (25 bp)
TTTTCCGGACCAGCGAGAGATTTCT
LOC_Os03g14260
Os.10527.1.S1_a_at--268--451Chr03:7739902..7739926 (25 bp)
ATCTATGCCTCTCGCTTTTGAAGAA
LOC_Os03g14260
Os.10527.1.S1_a_at--1075--3651Chr03:7739888..7739912 (25 bp)
CTTTTGAAGAACTGTGCCTCGGCAC
LOC_Os03g14260
Os.10527.1.S1_a_at--1132--1151Chr03:7739856..7739880 (25 bp)
AGTCTTTCAGCTATCTTGTTCAATT
LOC_Os03g14260
Os.10527.1.S1_a_at--390--6871Chr03:7739780..7739804 (25 bp)
GTATTCTTTCCCATGATTATTCTGA
LOC_Os03g14260
Os.10527.1.S1_a_at--1114--10771Chr03:7739714..7739738 (25 bp)
TTGATTGTTCTTCGTTTCCTGGAAA
LOC_Os03g14260
Os.10527.1.S1_a_at--989--8151Chr03:7739694..7739718 (25 bp)
GGAAAAACTCTGTGCTGATTCTCAA
LOC_Os03g14260
Target Sequence 
GAAGAGACGCTTTCTTGGTTTTCCGGGCATTGTGCAAGCTCTCCATGAAGACACCACCCAAGGATGCTCCAGCTGATCCC
ATTGTGATGCGTGGGAAGATCCTTGCTCTTGAACTTCTCAAGATATTGCTTGAAAATGCTGGGGCTGTTTTCCGGACCAG
CGAGAGATTTCTAGGGGCTATCAAGCAGTATCTATGCCTCTCGCTTTTGAAGAACTGTGCCTCGGCACATATGATAGTCT
TTCAGCTATCTTGTTCAATTTTTATTAGCTTGGTTTCAAGATTCAGACCAGGATTGAAGGCAGAAATTGGAGTATTCTTT
CCCATGATTATTCTGAGAGTTTTGGAAAATATTGCTCAACCAAATTATCAAGCAAAGTTGATTGTTCTTCGTTTCCTGGA
AAAACTCTGTGCTGATTCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10527.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis