Browse Element(s) Details


Os.47951.1.S1_at

Description gb:AK067733.1
DB_XREF= gi:32977751
TID=Os.47951.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47951 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013114C24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013114C24, full insert sequence.
FL= gb:AK067733.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1429011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14260Os.10527.1.S1_a_at11/113+7733755..7742718Sec7 domain containing protein, expressed
LOC_Os03g14260Os.10527.1.S2_a_at11/113+7733755..7742718Sec7 domain containing protein, expressed
LOC_Os03g14260Os.10527.1.S3_a_at11/113+7733755..7742718Sec7 domain containing protein, expressed
LOC_Os03g14260Os.14713.1.S1_at1/113+7733755..7742718Sec7 domain containing protein, expressed
LOC_Os03g14270OsAffx.18167.2.S1_at11/113+7746115..7747754LOB domain protein 18, putative
LOC_Os03g14280Os.6658.1.S1_at10/113+7752775..7758918Clp amino terminal domain containing protein, expressed
LOC_Os03g14290Os.47951.1.S1_at11/113+7761510..7763848expressed protein
LOC_Os03g14300Os.49217.1.S1_at11/113+7767861..7768646expressed protein
LOC_Os03g14310Os.17054.1.S1_at11/113+7771712..7774776expressed protein
LOC_Os03g14320OsAffx.12857.1.S1_at10/113+7775664..7777983hypothetical protein
LOC_Os03g14330NANA3+7780310..7783263expressed protein
LOC_Os03g14349NANA3+7784513..7788872retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47951.1.S1_at--669--5991Chr03:7763329..7763353 (25 bp)
GAGACCATGGTAGCTGACCCAGGTT
LOC_Os03g14290
Os.47951.1.S1_at--59--10031Chr03:7763369..7763393 (25 bp)
TAGAAGGATTCTACTCTGGAGCCAA
LOC_Os03g14290
Os.47951.1.S1_at--732--6511Chr03:7763401..7763425 (25 bp)
GATTCACCGGTAGGTTTGGATTCCA
LOC_Os03g14290
Os.47951.1.S1_at--473--7911Chr03:7763418..7763442 (25 bp)
GGATTCCAGTGGTGATGCAGATGTC
LOC_Os03g14290
Os.47951.1.S1_at--561--6031Chr03:7763468..7763492 (25 bp)
GAGATGTGATTGTCCCTGATACCAG
LOC_Os03g14290
Os.47951.1.S1_at--905--8011Chr03:7763518..7763542 (25 bp)
GGAGGACATCAGCTTGTACCAATTT
LOC_Os03g14290
Os.47951.1.S1_at--379--5911Chr03:7763562..7763586 (25 bp)
GAGCTTGAACCAAAGTGACCTGCCT
LOC_Os03g14290
Os.47951.1.S1_at--285--3831Chr03:7763581..7763605 (25 bp)
CTGCCTGCCCTGATATATACATGCT
LOC_Os03g14290
Os.47951.1.S1_at--501--611Chr03:7763601..7763625 (25 bp)
ATGCTGCATTTATCGACTCAACCTT
LOC_Os03g14290
Os.47951.1.S1_at--543--2991Chr03:7763722..7763746 (25 bp)
AATGTTTTGTAGAACTCTCACCCTC
LOC_Os03g14290
Os.47951.1.S1_at--233--351Chr03:7763824..7763848 (25 bp)
ATAACATGCTGTCTCTTTACTTTGC
LOC_Os03g14290
Target Sequence 
GAGACCATGGTAGCTGACCCAGGTTTGGTAGGTATTCATGTAGAAGGATTCTACTCTGGAGCCAAATGGTATGATTCACC
GGTAGGTTTGGATTCCAGTGGTGATGCAGATGTCAGTTTTAGACATGGTGGACTTGTGTGAGATGTGATTGTCCCTGATA
CCAGGAACATCATGTAAATTCTGTATACAGGAGGACATCAGCTTGTACCAATTTAATGTAGTATCTATAGGTAGAGCTTG
AACCAAAGTGACCTGCCTGCCCTGATATATACATGCTGCATTTATCGACTCAACCTTTGNTTAACTTATGTATAGTCCCC
NGTGTGGGTTTNCATCTTGNTACAAGANNATATAACTTTGGTTCTGTTCTTGATTAGCTATTTAGTCATAACTTAATGTT
TTGTAGAACTCTCACCCTCCCTCTCTCTCTCTCACGTGCGTGTGGGCACGAATGTGCATGTGCATTTTGTAAATTTAATG
CAAGGTTTTGCACACAATAACATGCTGTCTCTTTACTTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47951.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis