Browse Element(s) Details


Os.6658.1.S1_at

Description gb:AK100847.1
DB_XREF= gi:32986056
TID=Os.6658.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6658 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023123H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023123H08, full insert sequence.
FL= gb:AK100847.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1428010/11Clp amino terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14250Os.13708.1.S1_at11/113+7720007..7728422expressed protein
LOC_Os03g14260Os.10527.1.S1_a_at11/113+7733755..7742718Sec7 domain containing protein, expressed
LOC_Os03g14260Os.10527.1.S2_a_at11/113+7733755..7742718Sec7 domain containing protein, expressed
LOC_Os03g14260Os.10527.1.S3_a_at11/113+7733755..7742718Sec7 domain containing protein, expressed
LOC_Os03g14260Os.14713.1.S1_at1/113+7733755..7742718Sec7 domain containing protein, expressed
LOC_Os03g14270OsAffx.18167.2.S1_at11/113+7746115..7747754LOB domain protein 18, putative
LOC_Os03g14280Os.6658.1.S1_at10/113+7752775..7758918Clp amino terminal domain containing protein, expressed
LOC_Os03g14290Os.47951.1.S1_at11/113+7761510..7763848expressed protein
LOC_Os03g14300Os.49217.1.S1_at11/113+7767861..7768646expressed protein
LOC_Os03g14310Os.17054.1.S1_at11/113+7771712..7774776expressed protein
LOC_Os03g14320OsAffx.12857.1.S1_at10/113+7775664..7777983hypothetical protein
LOC_Os03g14330NANA3+7780310..7783263expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006510biological_processATP-dependent proteolysis
GO:0009658biological_processchloroplast organization and biogenesis
GO:0045037biological_processprotein import into chloroplast stroma
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0009570cellular_componentchloroplast stroma
GO:0004176molecular_functionATP-dependent peptidase activity
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6658.1.S1_at--1024--7811Chr03:7753400..7753424 (25 bp)
GGTCATAAAGTATTGGCTTCCCTTG
LOC_Os03g14280
Os.6658.1.S1_at--1061--3131Chr03:7753265..7753379 (25 bp)
AATTCACTGGCCAAAACGGCTGGTG
LOC_Os03g14280
Os.6658.1.S1_at--1121--5351Chr03:7753241..7753265 (25 bp)
GAAGAGGCTGCTATGAGTCCTAGAT
LOC_Os03g14280
Os.6658.1.S1_at--826--5471Chr03:7753188..7753212 (25 bp)
GAACTTCCCTGTGATGCAATGTGCT
LOC_Os03g14280
Os.6658.1.S1_at--1160--2971Chr03:7753171..7753195 (25 bp)
AATGTGCTTGCGTTTGGAACCTCAA
LOC_Os03g14280
Os.6658.1.S1_at--942--2831Chr03:7753148..7753172 (25 bp)
AAGTAACTTCTTGGCGACTCCAGTA
LOC_Os03g14280
Os.6658.1.S1_at--4--6891Chr03:7753126..7753150 (25 bp)
GTATCATGGCCCACGCATTAAGTTA
LOC_Os03g14280
Os.6658.1.S1_at--68--671Chr03:7753046..7753070 (25 bp)
ATGCAATATGTCAGACTCCCCTATT
LOC_Os03g14280
Os.6658.1.S1_at--455--9091Chr03:7752966..7752990 (25 bp)
TGCTCAGCTGGATTGGTGCAATTCT
LOC_Os03g14280
Os.6658.1.S1_at--380--8271Chr03:7752834..7752858 (25 bp)
GGCAGTGGACTTTGGACTGTTCAAT
LOC_Os03g14280
Os.6658.1.S1_at--153--5631NONE
GACACGCCATCTTTAAAGTTCCATT
NONE
Target Sequence 
GGTCATAAAGTATTGGCTTCCCTTGGTTTTGATGATGAGAGAGCCAATTCACTGGCCAAAACGGCTGGTGAAGAGGCTGC
TATGAGTCCTAGATAGCAAAAGGAGCCTTATAGTTTACTACTGAACTTCCCTGTGATGCAATGTGCTTGCGTTTGGAACC
TCAAGTAACTTCTTGGCGACTCCAGTATCATGGCCCACGCATTAAGTTAACTTGAAGAGATTGCTTCTACAAGTTTTAGG
GCTTTATTAAGATTGTTAGACTGAATGCAATATGTCAGACTCCCCTATTGCCCATACCTGTAAAAGCAGTGCAATGTATT
TTCAAAATGAGCATTTCTGTTGCTTGCTCAGCTGGATTGGTGCAATTCTATTAAAAGATCCTTTTGAAAGATAAAGATTT
TGAACGGGTTCAGAGCTAANNNNNACTANCATTCCATGGAAAGTNTNTGGTACGTTTTTCATTAGNGTTGAAANTAGGCA
GTGGACTTTGGACTGTTCAATGGAGCCATGTGAGTATGTGACACGCCATCTTTAAAGTTCCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6658.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis