Browse Element(s) Details


Os.17054.1.S1_at

Description gb:CB096375
DB_XREF= gi:27920567
DB_XREF=AF53-Rpf_03_K21_T7_093.ab1
CLONE=C0001029
TID=Os.17054.1
CNT=9
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.17054 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1431011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14270OsAffx.18167.2.S1_at11/113+7746115..7747754LOB domain protein 18, putative
LOC_Os03g14280Os.6658.1.S1_at10/113+7752775..7758918Clp amino terminal domain containing protein, expressed
LOC_Os03g14290Os.47951.1.S1_at11/113+7761510..7763848expressed protein
LOC_Os03g14300Os.49217.1.S1_at11/113+7767861..7768646expressed protein
LOC_Os03g14310Os.17054.1.S1_at11/113+7771712..7774776expressed protein
LOC_Os03g14320OsAffx.12857.1.S1_at10/113+7775664..7777983hypothetical protein
LOC_Os03g14330NANA3+7780310..7783263expressed protein
LOC_Os03g14349NANA3+7784513..7788872retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g14370Os.27683.2.S1_s_at11/113+7794107..7796785ACT domain containing protein, expressed
LOC_Os03g14370OsAffx.3240.1.S1_s_at11/113+7794107..7796785ACT domain containing protein, expressed
LOC_Os03g14380Os.14251.1.S1_a_at11/113+7798951..7806368Autophagy protein Apg9 containing protein, expressed
LOC_Os03g14380Os.14251.1.S2_at11/113+7798951..7806368Autophagy protein Apg9 containing protein, expressed
LOC_Os03g14380Os.14251.2.S1_x_at11/113+7798951..7806368Autophagy protein Apg9 containing protein, expressed
LOC_Os03g14380Os.14251.1.S1_at11/113+7798951..7806368Autophagy protein Apg9 containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17054.1.S1_at--438--771Chr03:7772796..7772820 (25 bp)
ATGTCGTCTGTGTAGTCATGACTGA
LOC_Os03g14310
Os.17054.1.S1_at--372--5891Chr03:7772836..7772860 (25 bp)
GAGCGATGTCACAGATTTCGACGAT
LOC_Os03g14310
Os.17054.1.S1_at--1019--2791Chr03:7772876..7772900 (25 bp)
AAGTTCAAGGCCCAGTACGTTCTTG
LOC_Os03g14310
Os.17054.1.S1_at--728--871Chr03:7772883..7772907 (25 bp)
AGGCCCAGTACGTTCTTGACATCGA
LOC_Os03g14310
Os.17054.1.S1_at--851--6991Chr03:7772890..7772914 (25 bp)
GTACGTTCTTGACATCGACGTGCGG
LOC_Os03g14310
Os.17054.1.S1_at--64--3931Chr03:7772912..7772936 (25 bp)
CGGCGTAAGCGGGTGTTATCCATCA
LOC_Os03g14310
Os.17054.1.S1_at--257--2671Chr03:7772918..7772942 (25 bp)
AAGCGGGTGTTATCCATCACCCAGC
LOC_Os03g14310
Os.17054.1.S1_at--349--391Chr03:7772933..7772957 (25 bp)
ATCACCCAGCACCACATTGAAAGTA
LOC_Os03g14310
Os.17054.1.S1_at--786--7711Chr03:7772959..7772983 (25 bp)
GGGTGATCTTATACCAGATCTCATC
LOC_Os03g14310
Os.17054.1.S1_at--107--1291Chr03:7772974..7772998 (25 bp)
AGATCTCATCGCCTGTGAGTTCACT
LOC_Os03g14310
Os.17054.1.S1_at--206--9611Chr03:7772979..7773003 (25 bp)
TCATCGCCTGTGAGTTCACTGCATA
LOC_Os03g14310
Target Sequence 
ATGTCGTCTGTGTAGTCATGACTGAAGTCGAGATTGAGGAGAGCGATGTCACAGATTTCGACGATGANGGNCAACAAGCT
CAAGTTCAAGGCCCAGTACGTTCTTGACATCGACGTGCGGCGTAAGCGGGTGTTATCCATCACCCAGCACCACATTGAAA
GTATGGGTGATCTTATACCAGATCTCATCGCCTGTGAGTTCACTGCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17054.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis