Browse Element(s) Details


Os.14251.1.S2_at

Description gb:AK100304.1
DB_XREF= gi:32985513
TID=Os.14251.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14251 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023078D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078D06, full insert sequence.
FL= gb:AK070612.1 gb:AK100304.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1438011/11Autophagy protein Apg9 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14310Os.17054.1.S1_at11/113+7771712..7774776expressed protein
LOC_Os03g14320OsAffx.12857.1.S1_at10/113+7775664..7777983hypothetical protein
LOC_Os03g14330NANA3+7780310..7783263expressed protein
LOC_Os03g14349NANA3+7784513..7788872retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g14370Os.27683.2.S1_s_at11/113+7794107..7796785ACT domain containing protein, expressed
LOC_Os03g14370OsAffx.3240.1.S1_s_at11/113+7794107..7796785ACT domain containing protein, expressed
LOC_Os03g14380Os.14251.1.S1_a_at11/113+7798951..7806368Autophagy protein Apg9 containing protein, expressed
LOC_Os03g14380Os.14251.1.S2_at11/113+7798951..7806368Autophagy protein Apg9 containing protein, expressed
LOC_Os03g14380Os.14251.2.S1_x_at11/113+7798951..7806368Autophagy protein Apg9 containing protein, expressed
LOC_Os03g14380Os.14251.1.S1_at11/113+7798951..7806368Autophagy protein Apg9 containing protein, expressed
LOC_Os03g14390OsAffx.12858.1.S1_at11/113+7807082..7808351hypothetical protein
LOC_Os03g14400Os.8110.1.S1_at10/113+7810937..7812796Cytochrome P450 family protein, expressed
LOC_Os03g14410Os.52789.1.S1_at1/113+7813588..7817890retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g14420Os.15637.1.S1_s_at11/113+7819865..7822224Cytochrome P450 family protein, expressed
LOC_Os03g14430OsAffx.12859.1.S1_at11/113+7822702..7823350hypothetical protein
LOC_Os03g14440OsAffx.3241.1.S1_at11/113+7823964..7824437hypothetical protein
LOC_Os03g14450Os.10756.1.S1_at11/113+7827049..7831767Enolase 2, putative, expressed
LOC_Os03g14450Os.57462.1.S1_x_at1/113+7827049..7831767Enolase 2, putative, expressed
LOC_Os03g14450Os.2232.3.S1_x_at1/113+7827049..7831767Enolase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006914biological_processautophagy
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14251.1.S2_at--428--5491Chr03:7799498..7799522 (25 bp)
GAACATTCTACTGGTCAACAAGGAA
LOC_Os03g14380
Os.14251.1.S2_at--893--8171Chr03:7799477..7799501 (25 bp)
GGAAGTTTTCTGGAGCCTCCGGAAT
LOC_Os03g14380
Os.14251.1.S2_at--576--511Chr03:7799446..7799470 (25 bp)
ATCGATATGTTGCTGGTAACCGTTC
LOC_Os03g14380
Os.14251.1.S2_at--1074--7051Chr03:7799431..7799455 (25 bp)
GTAACCGTTCCAGTTATCACTCTGG
LOC_Os03g14380
Os.14251.1.S2_at--302--391Chr03:7799416..7799440 (25 bp)
ATCACTCTGGTGATGTGTCTGATGG
LOC_Os03g14380
Os.14251.1.S2_at--440--4351Chr03:7799204..7799228 (25 bp)
CCAGTCGGCCTTCCTGTAAGAATAA
LOC_Os03g14380
Os.14251.1.S2_at--1072--1511Chr03:7799171..7799195 (25 bp)
AGCAGTGACCCTGTTTAGACTGAAA
LOC_Os03g14380
Os.14251.1.S2_at--1075--7031Chr03:7799115..7799139 (25 bp)
GTAAATATCTGTGTGAACCACGTCA
LOC_Os03g14380
Os.14251.1.S2_at--794--8971Chr03:7799102..7799126 (25 bp)
TGAACCACGTCACAAACTTCACCAA
LOC_Os03g14380
Os.14251.1.S2_at--320--8231Chr03:7799073..7799097 (25 bp)
GGCAAACGCCGCAAATTCATTTGTA
LOC_Os03g14380
Os.14251.1.S2_at--27--1451Chr03:7799047..7799071 (25 bp)
AGAACCACATATTACCTCACTGTAT
LOC_Os03g14380
Target Sequence 
GAACATTCTACTGGTCAACAAGGAAGTTTTCTGGAGCCTCCGGAATTTGGAAATCGATATGTTGCTGGTAACCGTTCCAG
TTATCACTCTGGTGATGTGTCTGATGGAAGTGTGGAAGAGCTTGAGCGAAGCTATAACAGAAGTAGCANGCAGCTGGAGA
AGACCTCAAGATTTGTCCACTACAAGGTATATGGACGACTCTGACATTGAGGAAGGGTTGAATCTTCCTTTTGCTGATCT
CCCGCAGAAGGATGAAGATGCTCGACATGGCACATCTGATACTAATGACCCCACGCCAGTCGGCCTTCCTGTAAGAATAA
TTCCTAGAAGCAGTGACCCTGTTTAGACTGAAAAGCTCTCAGATACGTATGTTTGTGCATGGTTGTAAATATCTGTGTGA
ACCACGTCACAAACTTCACCAAAACTGGCAAACGCCGCAAATTCATTTGTACAGAACCACATATTACCTCACTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14251.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis