Browse Element(s) Details


Os.27683.2.S1_s_at

Description gb:CB618504
DB_XREF= gi:29613491
DB_XREF=OSIIEa02H02.f
CLONE=OSIIEa02H02
TID=Os.27683.2
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.27683 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_172704.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1437011/11ACT domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14310Os.17054.1.S1_at11/113+7771712..7774776expressed protein
LOC_Os03g14320OsAffx.12857.1.S1_at10/113+7775664..7777983hypothetical protein
LOC_Os03g14330NANA3+7780310..7783263expressed protein
LOC_Os03g14349NANA3+7784513..7788872retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g14370Os.27683.2.S1_s_at11/113+7794107..7796785ACT domain containing protein, expressed
LOC_Os03g14370OsAffx.3240.1.S1_s_at11/113+7794107..7796785ACT domain containing protein, expressed
LOC_Os03g14380Os.14251.1.S1_a_at11/113+7798951..7806368Autophagy protein Apg9 containing protein, expressed
LOC_Os03g14380Os.14251.1.S2_at11/113+7798951..7806368Autophagy protein Apg9 containing protein, expressed
LOC_Os03g14380Os.14251.2.S1_x_at11/113+7798951..7806368Autophagy protein Apg9 containing protein, expressed
LOC_Os03g14380Os.14251.1.S1_at11/113+7798951..7806368Autophagy protein Apg9 containing protein, expressed
LOC_Os03g14390OsAffx.12858.1.S1_at11/113+7807082..7808351hypothetical protein
LOC_Os03g14400Os.8110.1.S1_at10/113+7810937..7812796Cytochrome P450 family protein, expressed
LOC_Os03g14410Os.52789.1.S1_at1/113+7813588..7817890retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g14420Os.15637.1.S1_s_at11/113+7819865..7822224Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006521biological_processregulation of amino acid metabolism
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005829cellular_componentcytosol
GO:0016597molecular_functionamino acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27683.2.S1_s_at--237--4071Chr03:7795052..7795076 (25 bp)
CGAGGACGGTCCTGGCTGATCCGTC
LOC_Os03g14370
Os.27683.2.S1_s_at--835--8531Chr03:7795091..7795115 (25 bp)
TGGACCGGAGGCTCCACCAGCTGCT
LOC_Os03g14370
Os.27683.2.S1_s_at--864--8911Chr03:7795211..7795235 (25 bp)
TGAGCTGCCGCGACAGGCCGAAGCT
LOC_Os03g14370
Os.27683.2.S1_s_at--676--9571Chr03:7795238..7795262 (25 bp)
TCTTCGACGTGGTCTGCACCTTGAC
LOC_Os03g14370
Os.27683.2.S1_s_at--857--9471Chr03:7795250..7795274 (25 bp)
TCTGCACCTTGACGGACTTGGATTA
LOC_Os03g14370
Os.27683.2.S1_s_at--564--8131Chr03:7795263..7795287 (25 bp)
GGACTTGGATTACGTGGTGTACCAC
LOC_Os03g14370
Os.27683.2.S1_s_at--847--3971Chr03:7795275..7795299 (25 bp)
CGTGGTGTACCACGGCACGTTCGAC
LOC_Os03g14370
Os.27683.2.S1_s_at--1023--5051Chr03:7795792..7795813 (22 bp)
GCAGCAGGAGTTCTACATACGGCGT
LOC_Os03g14370
Os.27683.2.S1_s_at--79--9531Chr03:7795800..7795824 (25 bp)
TCTACATACGGCGTTCGGACGGGCG
LOC_Os03g14370
Os.27683.2.S1_s_at--529--4231Chr03:7795842..7795866 (25 bp)
CCGAGAGGCAGCATGTGATCCGATG
LOC_Os03g14370
Os.27683.2.S1_s_at--870--8851Chr03:7795857..7795881 (25 bp)
TGATCCGATGCTTGCAAGCGGCAAT
LOC_Os03g14370
Target Sequence 
CGAGGACGGTCCTGGCTGATCCGTCGGCGGCCGGNAACCTGGACCGGAGGCTCCACCAGCTGCTGAANGAGGACGGNGAG
GCCGACAGCCGCGGCGCCGCGCCGATGACGGCGGTGGCGGTGCAGGATTGGGGGGAGAGAGGGTACTCGGTGGTGACCGT
GAGCTGCCGCGACAGGCCGAAGCTGCTCTTCGACGTGGTCTGCACCTTGACGGACTTGGATTACGTGGTGTACCACGGCA
CGTTCGACACCGACGGCGATCACGCGCAGCAGGAGTTCTACATACGGCGTTCGGACGGGCGGCCAATCAGCTCGGAGGCC
GAGAGGCAGCATGTGATCCGATGCTTGCAAGCGGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27683.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis