Browse Element(s) Details


OsAffx.3240.1.S1_s_at

Description tigr:9631.m01378
TID=OsAffx.3240.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=protein F4N2.2 (imported) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1437011/11ACT domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14310Os.17054.1.S1_at11/113+7771712..7774776expressed protein
LOC_Os03g14320OsAffx.12857.1.S1_at10/113+7775664..7777983hypothetical protein
LOC_Os03g14330NANA3+7780310..7783263expressed protein
LOC_Os03g14349NANA3+7784513..7788872retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g14370Os.27683.2.S1_s_at11/113+7794107..7796785ACT domain containing protein, expressed
LOC_Os03g14370OsAffx.3240.1.S1_s_at11/113+7794107..7796785ACT domain containing protein, expressed
LOC_Os03g14380Os.14251.1.S1_a_at11/113+7798951..7806368Autophagy protein Apg9 containing protein, expressed
LOC_Os03g14380Os.14251.1.S2_at11/113+7798951..7806368Autophagy protein Apg9 containing protein, expressed
LOC_Os03g14380Os.14251.2.S1_x_at11/113+7798951..7806368Autophagy protein Apg9 containing protein, expressed
LOC_Os03g14380Os.14251.1.S1_at11/113+7798951..7806368Autophagy protein Apg9 containing protein, expressed
LOC_Os03g14390OsAffx.12858.1.S1_at11/113+7807082..7808351hypothetical protein
LOC_Os03g14400Os.8110.1.S1_at10/113+7810937..7812796Cytochrome P450 family protein, expressed
LOC_Os03g14410Os.52789.1.S1_at1/113+7813588..7817890retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g14420Os.15637.1.S1_s_at11/113+7819865..7822224Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006521biological_processregulation of amino acid metabolism
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005829cellular_componentcytosol
GO:0016597molecular_functionamino acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3240.1.S1_s_at--429--5971Chr03:7796187..7796211 (25 bp)
GAGAACGGCCTCTCGGTGACGCACG
LOC_Os03g14370
OsAffx.3240.1.S1_s_at--1032--8931Chr03:7796203..7796227 (25 bp)
TGACGCACGCCGAGATCACGACAAG
LOC_Os03g14370
OsAffx.3240.1.S1_s_at--631--9651Chr03:7796218..7796242 (25 bp)
TCACGACAAGGGACGACATGGCCAT
LOC_Os03g14370
OsAffx.3240.1.S1_s_at--57--2131Chr03:7796233..7796257 (25 bp)
ACATGGCCATGAACGTCTTCCACGT
LOC_Os03g14370
OsAffx.3240.1.S1_s_at--167--2751Chr03:7796433..7796457 (25 bp)
AAGAAGAACCTCTTCAGCCTTGGCC
LOC_Os03g14370
OsAffx.3240.1.S1_s_at--782--4451Chr03:7796455..7796479 (25 bp)
GCCTCATAAGATCCTGCTCGTGAGT
LOC_Os03g14370
OsAffx.3240.1.S1_s_at--784--6371Chr03:7796464..7796488 (25 bp)
GATCCTGCTCGTGAGTACAGATGAC
LOC_Os03g14370
OsAffx.3240.1.S1_s_at--18--691Chr03:7796484..7796508 (25 bp)
ATGACGTGTCCGATCCGATGGCATG
LOC_Os03g14370
OsAffx.3240.1.S1_s_at--413--4051Chr03:7796494..7796518 (25 bp)
CGATCCGATGGCATGCTTGTGTAAA
LOC_Os03g14370
OsAffx.3240.1.S1_s_at--514--4671Chr03:7796526..7796550 (25 bp)
GCGGTCCATGGGTTAGTTTGTAAAT
LOC_Os03g14370
OsAffx.3240.1.S1_s_at--220--2311Chr03:7796618..7796642 (25 bp)
AAAGGCTGCTTGTCGGTAATTAACA
LOC_Os03g14370
Target Sequence 
GAGAACGGCCTCTCGGTGACGCACGCCGAGATCACGACAAGGGACGACATGGCCATGAACGTCTTCCACGTCACCGACGT
GGCCGGCCGCCCCGCCGATCCCAAGACGATCGACGAGGTGATACAGAGGATCGGCACGGAGAGCCTCCGGGTGGACGAGG
AGCGGTGGCCGCGCCTTTGCTCGGCGGAAGGCGACGCCGCCGGCCGCGGCGGCGGCGGCGGGCTGTTCTCGCTGGGGAGC
CTCGTCAAGAAGAACCTCTTCAGCCTTGGCCTCATAAGATCCTGCTCGTGAGTACAGATGACGTGTCCGATCCGATGGCA
TGCTTGTGTAAATATGGGGGCGGTCCATGGGTTAGTTTGTAAATTGAGTAGATTTTTTTATGCTCTTTTTTTAGGATTTA
TTAGTTGTCACGTGTATATAGTAGAAATGAAAAAGGCTGCTTGTCGGTAATTAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3240.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis