Browse Element(s) Details


Os.15637.1.S1_s_at

Description gb:AK062535.1
DB_XREF= gi:32972553
TID=Os.15637.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15637 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-104-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-104-F01, full insert sequence.
FL= gb:AK062535.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1442011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14370Os.27683.2.S1_s_at11/113+7794107..7796785ACT domain containing protein, expressed
LOC_Os03g14370OsAffx.3240.1.S1_s_at11/113+7794107..7796785ACT domain containing protein, expressed
LOC_Os03g14380Os.14251.1.S1_a_at11/113+7798951..7806368Autophagy protein Apg9 containing protein, expressed
LOC_Os03g14380Os.14251.1.S2_at11/113+7798951..7806368Autophagy protein Apg9 containing protein, expressed
LOC_Os03g14380Os.14251.2.S1_x_at11/113+7798951..7806368Autophagy protein Apg9 containing protein, expressed
LOC_Os03g14380Os.14251.1.S1_at11/113+7798951..7806368Autophagy protein Apg9 containing protein, expressed
LOC_Os03g14390OsAffx.12858.1.S1_at11/113+7807082..7808351hypothetical protein
LOC_Os03g14400Os.8110.1.S1_at10/113+7810937..7812796Cytochrome P450 family protein, expressed
LOC_Os03g14410Os.52789.1.S1_at1/113+7813588..7817890retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g14420Os.15637.1.S1_s_at11/113+7819865..7822224Cytochrome P450 family protein, expressed
LOC_Os03g14430OsAffx.12859.1.S1_at11/113+7822702..7823350hypothetical protein
LOC_Os03g14440OsAffx.3241.1.S1_at11/113+7823964..7824437hypothetical protein
LOC_Os03g14450Os.10756.1.S1_at11/113+7827049..7831767Enolase 2, putative, expressed
LOC_Os03g14450Os.57462.1.S1_x_at1/113+7827049..7831767Enolase 2, putative, expressed
LOC_Os03g14450Os.2232.3.S1_x_at1/113+7827049..7831767Enolase 2, putative, expressed
LOC_Os03g14460Os.26886.3.S1_x_at3/113+7838291..7839168transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14470Os.26886.1.S1_x_at9/113+7839813..7841638transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14470OsAffx.16244.1.S1_x_at1/113+7839813..7841638transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14480OsAffx.26148.1.S1_at6/113+7842593..7843831hypothetical protein
LOC_Os03g14480OsAffx.26148.1.S1_x_at5/113+7842593..7843831hypothetical protein
LOC_Os03g14490Os.26886.2.S1_s_at6/113+7844355..7847390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14490Os.26886.6.S1_s_at5/113+7844355..7847390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14490OsAffx.16467.1.S1_at4/113+7844355..7847390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14490Os.20521.1.S2_at1/113+7844355..7847390transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15637.1.S1_s_at--42--1291Chr03:7820369..7820393 (25 bp)
AGATCGGAGGCTACACGGTGCCCAA
LOC_Os03g14420
Os.15637.1.S1_s_at--833--2871Chr03:7820346..7820370 (25 bp)
AAGGGCGCGACCGTTATGGTGAATA
LOC_Os03g14420
Os.15637.1.S1_s_at--1105--10011Chr03:7820302..7820326 (25 bp)
TAGCAAGGTGTGGTTTGAGCCTGAC
LOC_Os03g14420
Os.15637.1.S1_s_at--1048--10751Chr03:7820288..7820312 (25 bp)
TTGAGCCTGACAAGTTCATCCCGGA
LOC_Os03g14420
Os.15637.1.S1_s_at--790--3531Chr03:7820272..7820296 (25 bp)
CATCCCGGAGAGGTTCCTGCAGAAA
LOC_Os03g14420
Os.15637.1.S1_s_at--67--1051Chr03:7820246..7820270 (25 bp)
AGGTGGATTTCCGTGGTCGCGACTT
LOC_Os03g14420
Os.15637.1.S1_s_at--265--9331Chr03:7820230..7820254 (25 bp)
TCGCGACTTCGAGCTGATTCCATTT
LOC_Os03g14420
Os.15637.1.S1_s_at--452--9171Chr03:7820177..7820201 (25 bp)
TGCCGCTGGCTGTTCGCATGGTGCA
LOC_Os03g14420
Os.15637.1.S1_s_at--961--811Chr03:7820160..7820184 (25 bp)
ATGGTGCATCTGATGCTCGCATCGT
LOC_Os03g14420
Os.15637.1.S1_s_at--105--4831Chr03:7820142..7820166 (25 bp)
GCATCGTTGCTGCACCGGTTTGAGT
LOC_Os03g14420
Os.15637.1.S1_s_at--381--6391Chr03:7820062..7820086 (25 bp)
GATCGTAATGACGTTGGCTACGCCC
LOC_Os03g14420
Target Sequence 
AGATCGGAGGCTACACGGTGCCCAAGGGCGCGACCGTTATGGTGAATATTTGGGCGATTGGCCGAGATAGCAAGGTGTGG
TTTGAGCCTGACAAGTTCATCCCGGAGAGGTTCCTGCAGAAAGAGGTGGATTTCCGTGGTCGCGACTTCGAGCTGATTCC
ATTTGGCTCCGGCCGAAGGATCTGTCCCGGGTTGCCGCTGGCTGTTCGCATGGTGCATCTGATGCTCGCATCGTTGCTGC
ACCGGTTTGAGTGGAGGCTTCNGCCGGAGGTTGAGAGGAACGGGGTGAACATGGAGGAGAAATTTGGGATCGTAATGACG
TTGGCTACGCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15637.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis