Browse Element(s) Details


OsAffx.12859.1.S1_at

Description tigr:9631.m01384
TID=OsAffx.12859.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1443011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14380Os.14251.1.S1_a_at11/113+7798951..7806368Autophagy protein Apg9 containing protein, expressed
LOC_Os03g14380Os.14251.1.S2_at11/113+7798951..7806368Autophagy protein Apg9 containing protein, expressed
LOC_Os03g14380Os.14251.2.S1_x_at11/113+7798951..7806368Autophagy protein Apg9 containing protein, expressed
LOC_Os03g14380Os.14251.1.S1_at11/113+7798951..7806368Autophagy protein Apg9 containing protein, expressed
LOC_Os03g14390OsAffx.12858.1.S1_at11/113+7807082..7808351hypothetical protein
LOC_Os03g14400Os.8110.1.S1_at10/113+7810937..7812796Cytochrome P450 family protein, expressed
LOC_Os03g14410Os.52789.1.S1_at1/113+7813588..7817890retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g14420Os.15637.1.S1_s_at11/113+7819865..7822224Cytochrome P450 family protein, expressed
LOC_Os03g14430OsAffx.12859.1.S1_at11/113+7822702..7823350hypothetical protein
LOC_Os03g14440OsAffx.3241.1.S1_at11/113+7823964..7824437hypothetical protein
LOC_Os03g14450Os.10756.1.S1_at11/113+7827049..7831767Enolase 2, putative, expressed
LOC_Os03g14450Os.57462.1.S1_x_at1/113+7827049..7831767Enolase 2, putative, expressed
LOC_Os03g14450Os.2232.3.S1_x_at1/113+7827049..7831767Enolase 2, putative, expressed
LOC_Os03g14460Os.26886.3.S1_x_at3/113+7838291..7839168transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14470Os.26886.1.S1_x_at9/113+7839813..7841638transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14470OsAffx.16244.1.S1_x_at1/113+7839813..7841638transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14480OsAffx.26148.1.S1_at6/113+7842593..7843831hypothetical protein
LOC_Os03g14480OsAffx.26148.1.S1_x_at5/113+7842593..7843831hypothetical protein
LOC_Os03g14490Os.26886.2.S1_s_at6/113+7844355..7847390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14490Os.26886.6.S1_s_at5/113+7844355..7847390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14490OsAffx.16467.1.S1_at4/113+7844355..7847390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g14490Os.20521.1.S2_at1/113+7844355..7847390transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12859.1.S1_at--1108--4651Chr03:7822780..7822804 (25 bp)
GCGTGCCGATTCCTGTCGTCGGCCA
LOC_Os03g14430
OsAffx.12859.1.S1_at--707--4391Chr03:7822801..7822825 (25 bp)
GCCACCCCGTCGTTGTGCGGAAAGA
LOC_Os03g14430
OsAffx.12859.1.S1_at--894--2411Chr03:7822826..7822850 (25 bp)
AAAACAACCAACTGCAGTGCTGCCG
LOC_Os03g14430
OsAffx.12859.1.S1_at--498--9051Chr03:7822838..7822862 (25 bp)
TGCAGTGCTGCCGGCTCAAGAAGGA
LOC_Os03g14430
OsAffx.12859.1.S1_at--753--2351Chr03:7823106..7823130 (25 bp)
AAAGCTTTGCCGCTCCGTCTGCCAT
LOC_Os03g14430
OsAffx.12859.1.S1_at--1080--4011Chr03:7823121..7823145 (25 bp)
CGTCTGCCATGCCTATTGACTACCT
LOC_Os03g14430
OsAffx.12859.1.S1_at--867--591Chr03:7823129..7823153 (25 bp)
ATGCCTATTGACTACCTCTCTCTTT
LOC_Os03g14430
OsAffx.12859.1.S1_at--534--4171Chr03:7823221..7823245 (25 bp)
CGCCATCATCTTAGCGCTGCCAGTG
LOC_Os03g14430
OsAffx.12859.1.S1_at--417--9991Chr03:7823232..7823256 (25 bp)
TAGCGCTGCCAGTGGTGAACCATGG
LOC_Os03g14430
OsAffx.12859.1.S1_at--319--3451Chr03:7823241..7823265 (25 bp)
CAGTGGTGAACCATGGTCCGTGGAT
LOC_Os03g14430
OsAffx.12859.1.S1_at--330--3511Chr03:7823252..7823276 (25 bp)
CATGGTCCGTGGATAGAGATTATGG
LOC_Os03g14430
Target Sequence 
GCGTGCCGATTCCTGTCGTCGGCCACCCCGTCGTTGTGCGGAAAGAAAAACAACCAACTGCAGTGCTGCCGGCTCAAGAA
GGAGAGTGAGAAGAGCCGGGCGCGGTCGCTGGAGCGGCAAAGCTTTGCCGCTCCGTCTGCCATGCCTATTGACTACCTCT
CTCTTTCTCCGGCGTTGGCCGCCTCACCTACATCGTCGCCTTCGACAGCCTCCCCCTCCGGCGCTGGCCACTCCGCCATC
ATCTTAGCGCTGCCAGTGGTGAACCATGGTCCGTGGATAGAGATTATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12859.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis