Browse Element(s) Details


Os.10527.1.S3_a_at

Description gb:AK119229.1
DB_XREF= gi:37988852
TID=Os.10527.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10527 (NCBI UniGene Cluster)
UG_TITLE=Guanine nucleotide-exchange protein GEP2 (GEP2) mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-101-A10, full insert sequence.
FL= gb:AK102770.1 gb:AK119229.1 gb:AK070145.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1426011/11Sec7 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14240OsAffx.12855.1.S1_at11/113+7716407..7717328NA
LOC_Os03g14250Os.13708.1.S1_at11/113+7720007..7728422expressed protein
LOC_Os03g14260Os.10527.1.S1_a_at11/113+7733755..7742718Sec7 domain containing protein, expressed
LOC_Os03g14260Os.10527.1.S2_a_at11/113+7733755..7742718Sec7 domain containing protein, expressed
LOC_Os03g14260Os.10527.1.S3_a_at11/113+7733755..7742718Sec7 domain containing protein, expressed
LOC_Os03g14260Os.14713.1.S1_at1/113+7733755..7742718Sec7 domain containing protein, expressed
LOC_Os03g14270OsAffx.18167.2.S1_at11/113+7746115..7747754LOB domain protein 18, putative
LOC_Os03g14280Os.6658.1.S1_at10/113+7752775..7758918Clp amino terminal domain containing protein, expressed
LOC_Os03g14290Os.47951.1.S1_at11/113+7761510..7763848expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005085molecular_functionguanyl-nucleotide exchange factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10527.1.S3_a_at--874--451Chr03:7734334..7734358 (25 bp)
ATCTCAGCTTTCTGGTGCTCCGCAG
LOC_Os03g14260
Os.10527.1.S3_a_at--208--3311Chr03:7734308..7734332 (25 bp)
CACTTGGTCATTGGCTTATTCCGGT
LOC_Os03g14260
Os.10527.1.S3_a_at--779--10191Chr03:7734292..7734316 (25 bp)
TATTCCGGTCGGTTCTTCAAAGCGG
LOC_Os03g14260
Os.10527.1.S3_a_at--1156--7591Chr03:7734251..7734275 (25 bp)
GGGCACCTCTTGTTGTCTCAACCTT
LOC_Os03g14260
Os.10527.1.S3_a_at--971--7151Chr03:7734237..7734261 (25 bp)
GTCTCAACCTTGCAAGCTATCAGTG
LOC_Os03g14260
Os.10527.1.S3_a_at--533--4871Chr03:7734222..7734246 (25 bp)
GCTATCAGTGGCCTTGGTGACTCAT
LOC_Os03g14260
Os.10527.1.S3_a_at--1047--4431Chr03:7734212..7734236 (25 bp)
GCCTTGGTGACTCATCTTTCGAGAA
LOC_Os03g14260
Os.10527.1.S3_a_at--84--4191Chr03:7734167..7734191 (25 bp)
CCCTTCTTGCTGGTCTGATAAGTTG
LOC_Os03g14260
Os.10527.1.S3_a_at--457--10031Chr03:7734103..7734127 (25 bp)
TATGTTTAGCACTTGGGTTGGCCCG
LOC_Os03g14260
Os.10527.1.S3_a_at--451--6731Chr03:7734075..7734099 (25 bp)
GTTCTTCAAACCTGCTGATGCTGAG
LOC_Os03g14260
Os.10527.1.S3_a_at--8--9131Chr03:7734057..7734081 (25 bp)
TGCTGAGCCCCATATCTGTTATATA
LOC_Os03g14260
Target Sequence 
ATCTCAGCTTTCTGGTGCTCCGCAGCCACTTGGTCATTGGCTTATTCCGGTCGGTTCTTCAAAGCGGAGAGAGCTTGCAG
CCCGGGCACCTCTTGTTGTCTCAACCTTGCAAGCTATCAGTGGCCTTGGTGACTCATCTTTCGAGAAGAACCTTGGCCAG
TTCTTCCCCCTTCTTGCTGGTCTGATAAGTTGCGAACATGGTTCAAGCGAAGTGCAGGTGGCATTGAGTGATATGTTTAG
CACTTGGGTTGGCCCGGTTGTTCTTCAAACCTGCTGATGCTGAGCCCCATATCTGTTATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10527.1.S3_a_at     

Putative homologies in rice

Putative homologies in arabidopsis