Browse Element(s) Details


Os.10544.1.S1_at

Description gb:AK106588.1
DB_XREF= gi:32991797
TID=Os.10544.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10544 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-111-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-F03, full insert sequence.
FL= gb:AK106588.1 gb:AK068410.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5363010/11acetyltransferase, GNAT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53580OsAffx.25704.1.S1_at10/113+30673727..30675773expressed protein
LOC_Os03g53590Os.11603.1.S1_at11/113+30677366..30683868expressed protein
LOC_Os03g53600Os.6095.1.S1_at11/113+30686876..30690666HTH DNA-binding protein, putative, expressed
LOC_Os03g53610NANA3+30691265..30692175Seed maturation protein
LOC_Os03g53620Os.55399.1.S1_at11/113+30693515..30694380Seed maturation protein, expressed
LOC_Os03g53630Os.10544.1.S2_at11/113+30698003..30706129acetyltransferase, GNAT family protein, expressed
LOC_Os03g53630Os.10544.1.S1_at10/113+30698003..30706129acetyltransferase, GNAT family protein, expressed
LOC_Os03g53640Os.20176.1.S1_at11/113+30706199..30707865expressed protein
LOC_Os03g53650Os.7102.1.S1_at11/113+30710412..30714085Cysteine synthase, putative, expressed
LOC_Os03g53660Os.46743.3.S1_a_at11/113+30714994..30724355myosin family protein, putative, expressed
LOC_Os03g53670Os.9822.2.S1_a_at11/113+30728128..30732240YT521-B-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10544.1.S1_at--381--9731NONE
TCAAGTCTCAACCTCTCACAAGAAG
NONE
Os.10544.1.S1_at--263--2771Chr03:30699077..30699101 (25 bp)
AAGACGCAGTTTCTGGGTTAGACCA
LOC_Os03g53630
Os.10544.1.S1_at--503--5231Chr03:30699102..30699126 (25 bp)
GAATATCTGTAGTTCAGCCATCACT
LOC_Os03g53630
Os.10544.1.S1_at--716--2271Chr03:30699166..30699190 (25 bp)
AAATCTGAGAACAAGGCCGCTGTGA
LOC_Os03g53630
Os.10544.1.S1_at--929--8051Chr03:30699271..30699295 (25 bp)
GGAGAGTCACCAGTTGCAATACCAT
LOC_Os03g53630
Os.10544.1.S1_at--35--6671Chr03:30699283..30699308 (25 bp)
GTTGCAATACCATCCCTAAGAAGGC
LOC_Os03g53630
Os.10544.1.S1_at--27--2791Chr03:30699309..30699333 (25 bp)
AAGAGATACATCCTCAGACACTGAG
LOC_Os03g53630
Os.10544.1.S1_at--799--1171Chr03:30699445..30699469 (25 bp)
AGTACATCTGTGAATTGCTCCAATA
LOC_Os03g53630
Os.10544.1.S1_at--232--5471Chr03:30699512..30699536 (25 bp)
GAACTGGCAGTGATACTTCCTTGAA
LOC_Os03g53630
Os.10544.1.S1_at--759--5491Chr03:30699537..30699561 (25 bp)
GAACACTTGTGTAAGACGTACTCGA
LOC_Os03g53630
Os.10544.1.S1_at--44--4031Chr03:30699553..30699577 (25 bp)
CGTACTCGAAGTGGTGGTGTTGTCC
LOC_Os03g53630
Target Sequence 
TCAAGTCTCAACCTCTCACAAGAAGGGGCAGCATAGTAAATAAAACAGAAGACGCAGTTTCTGGGTTAGACCAGAATATC
TGTAGTTCAGCCATCACTGATAAAAATGATATAGAGCTCACAGATTCTGAAGGAGTTAAATCTGAGAACAAGGCCGCTGT
GAGGAAGTCAATATTATCAGTTGGCGCTAAGATTGTTGCCAGTAAGAAGAGGATATTGGAATCAGGACTTGATAAAGCTA
GTGGAGAGTCACCAGTTGCAATACCATCCCTAAGAAGGCAAGAGATACATCCTCAGACACTGAGCTAGAGCAACCAAAAA
TGTCTTCTGGAAAGAAACTTACCAGAAATAACTGTGGCTCAAGTAAGAAAGGTATGTCGACAAGACGGCAACATCAGAGT
CAAACAGNTAAGTTGAGTACATCTGTGAATTGCTCCAATAAAAACGAATCTAAGCTATCACAGAATGAATCCGATGATGA
TGGAACTGGCAGTGATACTTCCTTGAAGAACACTTGTGTAAGACGTACTCGAAGTGGTGGTGTTGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10544.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis