Browse Element(s) Details


Os.6095.1.S1_at

Description gb:CD670734
DB_XREF= gi:38568519
DB_XREF=OsMR150
TID=Os.6095.1
CNT=38
FEA=FLmRNA
TIER=Stack
STK=7
UG=Os.6095 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023082F22, full insert sequence
FL= gb:AK071214.1 gb:AK060347.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5360011/11HTH DNA-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53550Os.31662.1.S1_at11/113+30661923..30663971retrotransposon protein, putative, unclassified, expressed
LOC_Os03g53560OsAffx.19542.3.S1_x_at6/113+30664021..30668243retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g53570NANA3+30669535..30670311retrotransposon protein, putative, unclassified
LOC_Os03g53580OsAffx.25704.1.S1_at10/113+30673727..30675773expressed protein
LOC_Os03g53590Os.11603.1.S1_at11/113+30677366..30683868expressed protein
LOC_Os03g53600Os.6095.1.S1_at11/113+30686876..30690666HTH DNA-binding protein, putative, expressed
LOC_Os03g53610NANA3+30691265..30692175Seed maturation protein
LOC_Os03g53620Os.55399.1.S1_at11/113+30693515..30694380Seed maturation protein, expressed
LOC_Os03g53630Os.10544.1.S2_at11/113+30698003..30706129acetyltransferase, GNAT family protein, expressed
LOC_Os03g53630Os.10544.1.S1_at10/113+30698003..30706129acetyltransferase, GNAT family protein, expressed
LOC_Os03g53640Os.20176.1.S1_at11/113+30706199..30707865expressed protein
LOC_Os03g53650Os.7102.1.S1_at11/113+30710412..30714085Cysteine synthase, putative, expressed
LOC_Os03g53660Os.46743.3.S1_a_at11/113+30714994..30724355myosin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6095.1.S1_at--1057--631Chr03:30689703..30689727 (25 bp)
ATGCAGAAAATTCTTGCCCCTCGTG
LOC_Os03g53600
Os.6095.1.S1_at--948--6651Chr03:30689739..30689763 (25 bp)
GTTGACGCTGCTTGTATTGTGGCTA
LOC_Os03g53600
Os.6095.1.S1_at--937--7691Chr03:30689921..30689945 (25 bp)
GGGTAACCAGCTTACAGCATCTCTC
LOC_Os03g53600
Os.6095.1.S1_at--469--1731Chr03:30689951..30689975 (25 bp)
ACCAGGCGTGGTCTTCATACAGAGC
LOC_Os03g53600
Os.6095.1.S1_at--712--491Chr03:30689986..30690010 (25 bp)
ATCGGCTTTCACAACGCATTGCAAG
LOC_Os03g53600
Os.6095.1.S1_at--1122--51Chr03:30690003..30690116 (25 bp)
ATTGCAAGTAGATCAGTGGCCGCTC
LOC_Os03g53600
Os.6095.1.S1_at--774--4791Chr03:30690113..30690137 (25 bp)
GCTCCGAGCTTGAGGGACAATCCCA
LOC_Os03g53600
Os.6095.1.S1_at--403--2231Chr03:30690129..30690153 (25 bp)
ACAATCCCAAGTTCTTCATCCAGAT
LOC_Os03g53600
Os.6095.1.S1_at--1114--10551Chr03:30690164..30690188 (25 bp)
TTCTTCCTCGCGTATGTCATGATTG
LOC_Os03g53600
Os.6095.1.S1_at--997--2211Chr03:30690226..30690250 (25 bp)
ACAAGCTACTAGTCGCGTATGTCTT
LOC_Os03g53600
Os.6095.1.S1_at--299--9691Chr03:30690340..30690364 (25 bp)
TCACTGGCTCCGTTTCAAGTTGAAA
LOC_Os03g53600
Target Sequence 
ATGCAGAAAATTCTTGCCCCTCGTGAGGTGATTACAGTTGACGCTGCTTGTATTGTGGCTATGACAACCACCATCAACTT
TCAGTTGAAAACCCCTAACCAACCGAGAAGAGTAGTCTTCAGTGGGGGTAACCAGCTTACAGCATCTCTCACAGGACCAG
GCGTGGTCTTCATACAGAGCCTACCCTTTCATCGGCTTTCACAACGCATTGCAAGTAGATCAGTGGCCGCTCCGAGCTTG
AGGGACAATCCCAAGTTCTTCATCCAGATTGTCATGTTCTTCTTCCTCGCGTATGTCATGATTGTATCATCGATAATTCT
GACAGATGTTTAGATGCTGCAACAAGCTACTAGTCGCGTATGTCTTAGAGAGTCATCAAATTGAAAGAGTAAAATCTCTT
GCAAGTTTGCAACTCAAAGTGCATTCTCCACCACCGACCCCCTTGTAGATGTGTCTCACTGGCTCCGTTTCAAGTTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6095.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis