Browse Element(s) Details


Os.20176.1.S1_at

Description gb:AK058795.1
DB_XREF= gi:32968813
TID=Os.20176.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20176 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-002-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-002-H05, full insert sequence.
FL= gb:AK058795.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5364011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53590Os.11603.1.S1_at11/113+30677366..30683868expressed protein
LOC_Os03g53600Os.6095.1.S1_at11/113+30686876..30690666HTH DNA-binding protein, putative, expressed
LOC_Os03g53610NANA3+30691265..30692175Seed maturation protein
LOC_Os03g53620Os.55399.1.S1_at11/113+30693515..30694380Seed maturation protein, expressed
LOC_Os03g53630Os.10544.1.S2_at11/113+30698003..30706129acetyltransferase, GNAT family protein, expressed
LOC_Os03g53630Os.10544.1.S1_at10/113+30698003..30706129acetyltransferase, GNAT family protein, expressed
LOC_Os03g53640Os.20176.1.S1_at11/113+30706199..30707865expressed protein
LOC_Os03g53650Os.7102.1.S1_at11/113+30710412..30714085Cysteine synthase, putative, expressed
LOC_Os03g53660Os.46743.3.S1_a_at11/113+30714994..30724355myosin family protein, putative, expressed
LOC_Os03g53670Os.9822.2.S1_a_at11/113+30728128..30732240YT521-B-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20176.1.S1_at--1144--10171Chr03:30707354..30707378 (25 bp)
TATTTGACCCGAACGAGAGGACCAA
LOC_Os03g53640
Os.20176.1.S1_at--541--2891Chr03:30707322..30707346 (25 bp)
AAGGTGTTGCCCAAGGCGTACCTGA
LOC_Os03g53640
Os.20176.1.S1_at--302--3211Chr03:30707203..30707227 (25 bp)
CAAGGAGTCCATCCGGGAGTTCCTC
LOC_Os03g53640
Os.20176.1.S1_at--29--4331Chr03:30706474..30706498 (25 bp)
CCATCAGATCACTGGCGGAGTTCTA
LOC_Os03g53640
Os.20176.1.S1_at--191--6071Chr03:30706457..30706481 (25 bp)
GAGTTCTACTCCAAGGCAGGGCCAT
LOC_Os03g53640
Os.20176.1.S1_at--210--4471Chr03:30706430..30706454 (25 bp)
GCCTCGCTGCCCAAAGATGTCAAGG
LOC_Os03g53640
Os.20176.1.S1_at--7--1991Chr03:30706382..30706406 (25 bp)
ACTGCAGACGCCTTTCTGTAGAGAT
LOC_Os03g53640
Os.20176.1.S1_at--850--7011Chr03:30706331..30706355 (25 bp)
GTACTATCTGCCAACAATCAACGAG
LOC_Os03g53640
Os.20176.1.S1_at--392--3151Chr03:30706302..30706326 (25 bp)
AATTGCATTGTAGCCAGCCTTCACT
LOC_Os03g53640
Os.20176.1.S1_at--48--1691Chr03:30706287..30706311 (25 bp)
AGCCTTCACTTTGCCTGCGAAAAGA
LOC_Os03g53640
Os.20176.1.S1_at--136--3231Chr03:30706220..30706244 (25 bp)
CAAGTAAATGCTTTCCAGAGTGATT
LOC_Os03g53640
Target Sequence 
TATTTGACCCGAACGAGAGGACCAAGTCGGGGAAGGTGTTGCCCAAGGCGTACCTGAAGGCGGCGAGGGAGGTGGTGCGG
ACGCTCCGGGAGTCGCTGGGGGAGGACGACGGCGGCGACGTGGCCAAGTTCCGGCGAGGCGCCGACGCCGCCAAGGAGTC
CATCCGGGAGTTCCTCGGCGGCTGGCGAGGCCAGCAAGCCGTCNNNNNNNAGGAGTNANNNNTTGCGCTGGAGAAGGCCA
TCAGATCACTGGCGGAGTTCTACTCCAAGGCAGGGCCATTCGCCTCGCTGCCCAAAGATGTCAAGGACAAGATCCTCGCC
AACCTCAACACTGCAGACGCCTTTCTGTAGAGATTTATTTTCTTCTGTCAGAAAAAAAAAGTACTATCTGCCAACAATCA
ACGAGTGATAATTGCATTGTAGCCAGCCTTCACTTTGCCTGCGAAAAGATCATTGGCAAAGACAGAAAAGAGCAGATAGA
ACATATGATTACAAGTAAATGCTTTCCAGAGTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20176.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis