Browse Element(s) Details


Os.10544.1.S2_at

Description gb:AK068410.1
DB_XREF= gi:32978428
TID=Os.10544.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10544 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-111-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013149G09, full insert sequence.
FL= gb:AK106588.1 gb:AK068410.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5363011/11acetyltransferase, GNAT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53580OsAffx.25704.1.S1_at10/113+30673727..30675773expressed protein
LOC_Os03g53590Os.11603.1.S1_at11/113+30677366..30683868expressed protein
LOC_Os03g53600Os.6095.1.S1_at11/113+30686876..30690666HTH DNA-binding protein, putative, expressed
LOC_Os03g53610NANA3+30691265..30692175Seed maturation protein
LOC_Os03g53620Os.55399.1.S1_at11/113+30693515..30694380Seed maturation protein, expressed
LOC_Os03g53630Os.10544.1.S2_at11/113+30698003..30706129acetyltransferase, GNAT family protein, expressed
LOC_Os03g53630Os.10544.1.S1_at10/113+30698003..30706129acetyltransferase, GNAT family protein, expressed
LOC_Os03g53640Os.20176.1.S1_at11/113+30706199..30707865expressed protein
LOC_Os03g53650Os.7102.1.S1_at11/113+30710412..30714085Cysteine synthase, putative, expressed
LOC_Os03g53660Os.46743.3.S1_a_at11/113+30714994..30724355myosin family protein, putative, expressed
LOC_Os03g53670Os.9822.2.S1_a_at11/113+30728128..30732240YT521-B-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10544.1.S2_at--392--5091Chr03:30705575..30705599 (25 bp)
GCACCCTGGTAGTTTCAAGCATTGA
LOC_Os03g53630
Os.10544.1.S2_at--339--5391Chr03:30705619..30705643 (25 bp)
GAAGCACACCGATCCTTCATTGTTA
LOC_Os03g53630
Os.10544.1.S2_at--155--171Chr03:30705646..30705670 (25 bp)
ATTATTCTCTTTTGACTCGGCATGC
LOC_Os03g53630
Os.10544.1.S2_at--573--5351Chr03:30705718..30705742 (25 bp)
GAAGATCCCTTGCAGAGCAGCAGCA
LOC_Os03g53630
Os.10544.1.S2_at--606--1751Chr03:30705742..30705766 (25 bp)
ACCTCGGTTCTGCTCAATATTGATG
LOC_Os03g53630
Os.10544.1.S2_at--122--2371Chr03:30705800..30705824 (25 bp)
AAACCAGCCTGTGCAGTGTTGGACT
LOC_Os03g53630
Os.10544.1.S2_at--579--8511Chr03:30705819..30705843 (25 bp)
TGGACTCCGATCACCTAACTTTAAG
LOC_Os03g53630
Os.10544.1.S2_at--356--9991Chr03:30705930..30705954 (25 bp)
TACCAAAGGCCAACGTGTGCCGCAA
LOC_Os03g53630
Os.10544.1.S2_at--126--7271Chr03:30705946..30705970 (25 bp)
GTGCCGCAAAATCTTCGTACATGTT
LOC_Os03g53630
Os.10544.1.S2_at--942--4011Chr03:30705961..30705985 (25 bp)
CGTACATGTTTCTTTACCTGCTATG
LOC_Os03g53630
Os.10544.1.S2_at--36--10151Chr03:30706080..30706104 (25 bp)
TATGCCACCTGTTCTCATGTTGGAA
LOC_Os03g53630
Target Sequence 
GCACCCTGGTAGTTTCAAGCATTGACAGATACTATTGAGGACATGAAGCACACCGATCCTTCATTGTTACTATTATTCTC
TTTTGACTCGGCATGCGGTTCGTCGGTTGGCAGAAGTAGCCTGGATAGAGAGGGCGAGTTTTTGAAGATCCCTTGCAGAG
CAGCAGCACCTCGGTTCTGCTCAATATTGATGATTCAATTGACTCTTTGGTTTCGGTTTGACTTGAAACCAGCCTGTGCA
GTGTTGGACTCCGATCACCTAACTTTAAGTGGTTTACCTTTACCTGTAAAGTCAGCATGTAGAACTGAGATGATAGTTTT
ATTCCGTGTTTTTTTTTTCTGGATGGTTAACTTAGTACCAAAGGCCAACGTGTGCCGCAAAATCTTCGTACATGTTTCTT
TACCTGCTATGTGACAGTAGCNTTGTTTTTGNCNAGCCCATTNTTNTTTGCAGCCAGATCTCATCTGTAAGACACTAATG
CATGGGCAAGCAGAAAAAAAATCTCAGATATGCCACCTGTTCTCATGTTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10544.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis