Browse Element(s) Details


Os.10596.1.S1_at

Description gb:AK065238.1
DB_XREF= gi:32975256
TID=Os.10596.1
CNT=31
FEA=FLmRNA
TIER=FL+Stack
STK=11
UG=Os.10596 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-037-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002I04, full insert sequence.
FL= gb:AK065238.1 gb:AK104705.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4561911/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g45570NANA3+25673515..25676402transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g45580OsAffx.13365.1.S1_at11/113+25679220..25680497Zinc knuckle family protein, expressed
LOC_Os03g45580OsAffx.13365.1.S1_x_at11/113+25679220..25680497Zinc knuckle family protein, expressed
LOC_Os03g45590OsAffx.3521.1.S1_at11/113+25681048..25686261retrotransposon protein, putative, unclassified
LOC_Os03g45590OsAffx.3521.1.S1_x_at11/113+25681048..25686261retrotransposon protein, putative, unclassified
LOC_Os03g45590Os.46012.2.S1_x_at4/113+25681048..25686261retrotransposon protein, putative, unclassified
LOC_Os03g45590Os.27088.1.A1_x_at2/113+25681048..25686261retrotransposon protein, putative, unclassified
LOC_Os03g45590Os.46012.3.S1_x_at2/113+25681048..25686261retrotransposon protein, putative, unclassified
LOC_Os03g45590OsAffx.30387.1.S1_at1/113+25681048..25686261retrotransposon protein, putative, unclassified
LOC_Os03g45590Os.45902.1.A1_x_at1/113+25681048..25686261retrotransposon protein, putative, unclassified
LOC_Os03g45619Os.10596.1.S1_at11/113+25700226..25714876Cytochrome P450 family protein, expressed
LOC_Os03g45619Os.51541.1.S1_at11/113+25700226..25714876Cytochrome P450 family protein, expressed
LOC_Os03g45619OsAffx.13368.1.S1_at10/113+25700226..25714876Cytochrome P450 family protein, expressed
LOC_Os03g45619OsAffx.21533.1.S1_at1/113+25700226..25714876Cytochrome P450 family protein, expressed
LOC_Os03g45650NANA3+25716331..25717631transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g45670NANA3+25724443..25728965retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g45680NANA3+25729214..25731012retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10596.1.S1_at--282--4291Chr03:25701443..25701467 (25 bp)
CCACGGTTCACCTAAACCCTATGAT
LOC_Os03g45619
Os.10596.1.S1_at--573--6471Chr03:25700959..25700983 (25 bp)
GATACTGCTGAACCAACCGGTGGTG
LOC_Os03g45619
Os.10596.1.S1_at--837--3431Chr03:25700883..25700907 (25 bp)
CAGATTTCGCTAAGCTGCAGACGGC
LOC_Os03g45619
Os.10596.1.S1_at--993--5491Chr03:25700554..25700578 (25 bp)
GAACAATGGTGCTTGGTCCAGGACT
LOC_Os03g45619
Os.10596.1.S1_at--7--7791Chr03:25700540..25700564 (25 bp)
GGTCCAGGACTACGATTCCCTGAAG
LOC_Os03g45619
Os.10596.1.S1_at--475--9891Chr03:25700468..25700492 (25 bp)
TACTTCTAGCCCCTACACAATATAT
LOC_Os03g45619
Os.10596.1.S1_at--1059--7831Chr03:25700401..25700425 (25 bp)
GGTACTTCGATGTAATTTCCATTAA
LOC_Os03g45619
Os.10596.1.S1_at--551--4311Chr03:25700383..25700407 (25 bp)
CCATTAATTTTCTGCTGTTCCCATT
LOC_Os03g45619
Os.10596.1.S1_at--785--3871Chr03:25700369..25700393 (25 bp)
CTGTTCCCATTAGTTCACTGCTGAA
LOC_Os03g45619
Os.10596.1.S1_at--713--6751Chr03:25700357..25700381 (25 bp)
GTTCACTGCTGAATGAGCTATGCTT
LOC_Os03g45619
Os.10596.1.S1_at--573--4871Chr03:25700341..25700365 (25 bp)
GCTATGCTTATTCTTCACTTTGCCA
LOC_Os03g45619
Target Sequence 
CCACGGTTCACCTAAACCCTATGATTTATAAGGATCCAAATATATTCAATCCTTGGAGATGGAAGGATACTGCTGAACCA
ACCGGTGGTGCCTCCAAGGATTTCATGGCCTTTGGAGGGGGACTGCGCTTGTGTGTTGGTGCAGATTTCGCTAAGCTGCA
GACGGCGATCTTCCTCCACTGCTTAGTCACCAAGTATAGATGGAAAGCGATCAAGGGAGGAACAATGGTGCTTGGTCCAG
GACTACGATTCCCTGAAGGTTTTCACATCCAACTTTTCCCAAAACCTTGAAGTACCGGGGCCAGATACTTCTAGCCCCTA
CACAATATATGTAGCTCAGAAGCAACGTTTGAGATCTATATTGTTGATGATTGGTACTTCGATGTAATTTCCATTAATTT
TCTGCTGTTCCCATTAGTTCACTGCTGAATGAGCTATGCTTATTCTTCACTTTGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10596.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis