Browse Element(s) Details


Os.51541.1.S1_at

Description gb:AK063030.1
DB_XREF= gi:32973048
TID=Os.51541.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51541 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-110-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-110-C04, full insert sequence.
FL= gb:AK063030.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4561911/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g45570NANA3+25673515..25676402transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g45580OsAffx.13365.1.S1_at11/113+25679220..25680497Zinc knuckle family protein, expressed
LOC_Os03g45580OsAffx.13365.1.S1_x_at11/113+25679220..25680497Zinc knuckle family protein, expressed
LOC_Os03g45590OsAffx.3521.1.S1_at11/113+25681048..25686261retrotransposon protein, putative, unclassified
LOC_Os03g45590OsAffx.3521.1.S1_x_at11/113+25681048..25686261retrotransposon protein, putative, unclassified
LOC_Os03g45590Os.46012.2.S1_x_at4/113+25681048..25686261retrotransposon protein, putative, unclassified
LOC_Os03g45590Os.27088.1.A1_x_at2/113+25681048..25686261retrotransposon protein, putative, unclassified
LOC_Os03g45590Os.46012.3.S1_x_at2/113+25681048..25686261retrotransposon protein, putative, unclassified
LOC_Os03g45590OsAffx.30387.1.S1_at1/113+25681048..25686261retrotransposon protein, putative, unclassified
LOC_Os03g45590Os.45902.1.A1_x_at1/113+25681048..25686261retrotransposon protein, putative, unclassified
LOC_Os03g45619Os.10596.1.S1_at11/113+25700226..25714876Cytochrome P450 family protein, expressed
LOC_Os03g45619Os.51541.1.S1_at11/113+25700226..25714876Cytochrome P450 family protein, expressed
LOC_Os03g45619OsAffx.13368.1.S1_at10/113+25700226..25714876Cytochrome P450 family protein, expressed
LOC_Os03g45619OsAffx.21533.1.S1_at1/113+25700226..25714876Cytochrome P450 family protein, expressed
LOC_Os03g45650NANA3+25716331..25717631transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g45670NANA3+25724443..25728965retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g45680NANA3+25729214..25731012retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51541.1.S1_at--940--10111Chr03:25714499..25714523 (25 bp)
TATGTGTTCTCTCCATTAATCTAAA
LOC_Os03g45619
Os.51541.1.S1_at--1059--7991Chr03:25714443..25714467 (25 bp)
GGATGGAGTTTCAACGTCGTCTAGA
LOC_Os03g45619
Os.51541.1.S1_at--801--7831Chr03:25714416..25714440 (25 bp)
GGTAAATATACATCTTCTTCCTCCA
LOC_Os03g45619
Os.51541.1.S1_at--746--10451Chr03:25714391..25714415 (25 bp)
TTCCTAAACCAATATCTTCTTCCTC
LOC_Os03g45619
Os.51541.1.S1_at--179--9031Chr03:25714306..25714330 (25 bp)
TGCACGTAAGCATACATCACGACAT
LOC_Os03g45619
Os.51541.1.S1_at--928--5451Chr03:25714221..25714245 (25 bp)
GAACGTCAATATCTTGAGCGCCCAT
LOC_Os03g45619
Os.51541.1.S1_at--972--5871Chr03:25714206..25714230 (25 bp)
GAGCGCCCATCGACGCGAGAAAGTT
LOC_Os03g45619
Os.51541.1.S1_at--230--6011Chr03:25714084..25714108 (25 bp)
GAGAGCATGTACTGCTACCGAATTG
LOC_Os03g45619
Os.51541.1.S1_at--601--1791Chr03:25714068..25714092 (25 bp)
ACCGAATTGATTTTTCTGGACGACA
LOC_Os03g45619
Os.51541.1.S1_at--519--3911Chr03:25714053..25714077 (25 bp)
CTGGACGACACTTTTTAGGACGCAA
LOC_Os03g45619
Os.51541.1.S1_at--971--1091Chr03:25714029..25714053 (25 bp)
AGTGGACCAAAACTGTTCCTCTCAG
LOC_Os03g45619
Target Sequence 
TATGTGTTCTCTCCATTAATCTAAAATATAAGCATTTCTGACTATATATACATGATGGATGGAGTTTCAACGTCGTCTAG
ACAGGTAAATATACATCTTCTTCCTCCATTCCTAAACCAATATCTTCTTCCTCCATTCCAAAACCTCAGCGAAAAATGTT
TAATTATATTTTAAAACAGAGAAAGTTTAATAATGCACGTAAGCATACATCACGACATCACGTACAGCTCCGCCAGTTTG
TTTCCTTGGTTGAATGCAAAACTGTGCTAACATGATCAGAACGTCAATATCTTGAGCGCCCATCGACGCGAGAAAGTTGC
ATCACAATATCAACATCAACATGAGAAGATGAAATTATTACGTAGCTAAAAATTCGTCCACTTTTAAATGATATATCCTT
AACATGGCATTCAAAGAGAGCATGTACTGCTACCGAATTGATTTTTCTGGACGACACTTTTTAGGACGCAAGTGGACCAA
AACTGTTCCTCTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51541.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis