Browse Element(s) Details


Os.10603.1.S1_at

Description gb:AK068454.1
DB_XREF= gi:32978472
TID=Os.10603.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10603 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013155G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013155G01, full insert sequence.
FL= gb:AK068454.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1259011/11Adaptin N terminal region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12550Os.17828.1.S1_s_at11/113+6626405..6632923expressed protein
LOC_Os03g12560Os.9413.1.S1_at11/113+6633739..6635783expressed protein
LOC_Os03g12570Os.12659.1.S1_at11/113+6637038..6647835C-5 cytosine-specific DNA methylase family protein, expressed
LOC_Os03g12580OsAffx.22279.1.S1_at11/113+6653353..6654586retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g12590Os.10603.1.S1_at11/113+6655525..6662942Adaptin N terminal region family protein, expressed
LOC_Os03g12590Os.43914.1.S1_x_at11/113+6655525..6662942Adaptin N terminal region family protein, expressed
LOC_Os03g12600OsAffx.32166.1218.S1_x_at5/113+6666205..6674361retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g12610Os.25986.3.S1_x_at11/113+6677412..66854485'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
LOC_Os03g12610Os.25986.1.S1_a_at11/113+6677412..66854485'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
LOC_Os03g12620Os.45998.1.S1_x_at11/113+6685350..6689458Glucan endo-1,3-beta-glucosidase 7 precursor, putative, expressed
LOC_Os03g12620Os.45998.1.S1_at11/113+6685350..6689458Glucan endo-1,3-beta-glucosidase 7 precursor, putative, expressed
LOC_Os03g12620OsAffx.25070.1.S1_at2/113+6685350..6689458Glucan endo-1,3-beta-glucosidase 7 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030276molecular_functionclathrin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10603.1.S1_at--227--1351Chr03:6662611..6662635 (25 bp)
AGAGCCGGTAGATAGTCTTTTTCAC
LOC_Os03g12590
Os.10603.1.S1_at--1018--7831Chr03:6662617..6662641 (25 bp)
GGTAGATAGTCTTTTTCACCTTTCG
LOC_Os03g12590
Os.10603.1.S1_at--436--331Chr03:6662655..6662679 (25 bp)
ATACTACACCTATTGATGCCTCACT
LOC_Os03g12590
Os.10603.1.S1_at--594--3671Chr03:6662664..6662688 (25 bp)
CTATTGATGCCTCACTTTTTACAGA
LOC_Os03g12590
Os.10603.1.S1_at--17--31Chr03:6662835..6662859 (25 bp)
ATTGGTGAACCGTGAACATGCTGCG
LOC_Os03g12590
Os.10603.1.S1_at--830--8971Chr03:6662847..6662871 (25 bp)
TGAACATGCTGCGAATCCTGTGACC
LOC_Os03g12590
Os.10603.1.S1_at--404--4591Chr03:6662857..6662881 (25 bp)
GCGAATCCTGTGACCTGTGAGTTGT
LOC_Os03g12590
Os.10603.1.S1_at--311--7391Chr03:6662873..6662897 (25 bp)
GTGAGTTGTCACACTAACAGTAACA
LOC_Os03g12590
Os.10603.1.S1_at--913--2451Chr03:6662894..6662918 (25 bp)
AACAAGTTAGTTCTCGTATGCTCAC
LOC_Os03g12590
Os.10603.1.S1_at--151--6791Chr03:6662899..6662923 (25 bp)
GTTAGTTCTCGTATGCTCACGGAAA
LOC_Os03g12590
Os.10603.1.S1_at--1132--6891Chr03:6662909..6662933 (25 bp)
GTATGCTCACGGAAAACCACTAAAT
LOC_Os03g12590
Target Sequence 
AGAGCCGGTAGATAGTCTTTTTCACCTTTCGTGATAAAATAGTTATACTACACCTATTGATGCCTCACTTTTTACAGANA
ACACTCCTGCCTCGTGCGTATTATTGCTCAGGTAGTGTATTAGTGTATCAGATCATGTCCCCTTGTGTAGTTGTGTTCAC
CGCTCGGTTTGATTTTTTGTTTCTTTTCTTTGGACAGTTTGTTTACTTAATGTGGATATAATTCATTGGTGAACCGTGAA
CATGCTGCGAATCCTGTGACCTGTGAGTTGTCACACTAACAGTAACAAGTTAGTTCTCGTATGCTCACGGAAAACCACTA
AAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10603.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis