Browse Element(s) Details


Os.10618.1.S1_s_at

Description gb:AU173300
DB_XREF= gi:12623087
DB_XREF=AU173300
CLONE=R2068
TID=Os.10618.1
CNT=36
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.10618 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_173522.1 (A.thaliana) putative SPL1-related protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4026011/11SBP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40250OsAffx.6093.1.S1_at11/118+25328770..25335292expressed protein
LOC_Os08g40260Os.4610.1.A1_s_at11/118+25349618..25354614SBP domain containing protein, expressed
LOC_Os08g40260Os.10618.1.S1_s_at11/118+25349618..25354614SBP domain containing protein, expressed
LOC_Os08g40270OsAffx.6094.1.S1_x_at11/118+25360662..25363516Protein kinase domain containing protein
LOC_Os08g40280Os.56331.1.S1_at5/118+25365412..25368974Protein kinase domain containing protein, expressed
LOC_Os08g40290Os.46012.2.S1_x_at9/118+25372470..25376984retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40290Os.46012.3.S1_x_at6/118+25372470..25376984retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40290Os.27088.1.A1_x_at5/118+25372470..25376984retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40300NANA8+25379188..25385619expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10618.1.S1_s_at--94--8151Chr08:25354041..25354065 (25 bp)
GGAAATACCTTGCAACAGCCAGAAG
LOC_Os08g40260
Os.10618.1.S1_s_at--1002--11Chr08:25354135..25354159 (25 bp)
ATTGTAAGGATGAACCCCTCCCAGA
LOC_Os08g40260
Os.10618.1.S1_s_at--898--6051Chr08:25354238..25354262 (25 bp)
GAGTTGGCAAGTAGTTTCTGTGACA
LOC_Os08g40260
Os.10618.1.S1_s_at--1110--5271Chr08:25354265..25354289 (25 bp)
GAATGTATCAAGTGTGCCCTCACAA
LOC_Os08g40260
Os.10618.1.S1_s_at--811--7631Chr08:25354299..25354323 (25 bp)
GGGACGCTATTAGTTCTGGGCTAAA
LOC_Os08g40260
Os.10618.1.S1_s_at--460--1171Chr08:25354331..25354355 (25 bp)
AGTAACCTTGATTTCTTTTTTGCTG
LOC_Os08g40260
Os.10618.1.S1_s_at--758--9011Chr08:25354357..25354381 (25 bp)
TGCAATTGTGAATCTGCTGCTTAAT
LOC_Os08g40260
Os.10618.1.S1_s_at--1069--2091Chr08:25354405..25354429 (25 bp)
ACATCGATATGTCTTTACCTCTTTT
LOC_Os08g40260
Os.10618.1.S1_s_at--703--3971Chr08:25354457..25354481 (25 bp)
CGGTGCTTTAGCATGAAACTGTCTT
LOC_Os08g40260
Os.10618.1.S1_s_at--689--9951Chr08:25354520..25354544 (25 bp)
TACCGTTGACAGTACCCATGTAGCT
LOC_Os08g40260
Os.10618.1.S1_s_at--47--8271Chr08:25354557..25354581 (25 bp)
GGCAGATTACAGGTTTATCCTCATC
LOC_Os08g40260
Target Sequence 
GGAAATACCTTGCAACAGCCAGAAGGTTTGAAACCAGACAACTTTTGACTGTTTGAATTTCCTTGGAACTTTGATAAGAA
CGGGAGAGTATATAATTGTAAGGATGAACCCCTCCCAGAAAAGAAGTGTGGATGGATGGGGNCAGAGCATTTGGGGGAGC
AGAGAAACCCTGACAAAATATTGGATGAATCTGCGCAGAGTTGGCAAGTAGTTTCTGTGACAAGGAATGTATCAAGTGTG
CCCTCACAAGGTGAGATGGGGACGCTATTAGTTCTGGGCTAAAATGAGTAAGTAACCTTGATTTCTTTTTTGCTGGTGCA
ATTGTGAATCTGCTGCTTAATGTATCACAAGATGGTGTTTAATTACATCGATATGTCTTTACCTCTTTTTTTTTTTNNGA
CATTTTTGTGTATCTATACGGTGCTTTAGCATGAAACTGTCTTTTGTCATCTTTACATAGTAGCAGGGGTAATTTGGAAG
GTACCGTTGACAGTACCCATGTAGCTAAATACAANTGAGGCAGATTACAGGTTTATCCTCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10618.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis