Browse Element(s) Details


OsAffx.6094.1.S1_x_at

Description tigr:9636.m04074
TID=OsAffx.6094.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to lectin-like protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4027011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40260Os.4610.1.A1_s_at11/118+25349618..25354614SBP domain containing protein, expressed
LOC_Os08g40260Os.10618.1.S1_s_at11/118+25349618..25354614SBP domain containing protein, expressed
LOC_Os08g40270OsAffx.6094.1.S1_x_at11/118+25360662..25363516Protein kinase domain containing protein
LOC_Os08g40280Os.56331.1.S1_at5/118+25365412..25368974Protein kinase domain containing protein, expressed
LOC_Os08g40290Os.46012.2.S1_x_at9/118+25372470..25376984retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40290Os.46012.3.S1_x_at6/118+25372470..25376984retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40290Os.27088.1.A1_x_at5/118+25372470..25376984retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40300NANA8+25379188..25385619expressed protein
LOC_Os08g40310OsAffx.29607.1.S1_x_at11/118+25385861..25392208transposon protein, putative, unclassified
LOC_Os08g40310OsAffx.29607.5.S1_x_at10/118+25385861..25392208transposon protein, putative, unclassified
LOC_Os08g40310OsAffx.29607.3.S1_x_at8/118+25385861..25392208transposon protein, putative, unclassified
LOC_Os08g40310OsAffx.29607.2.S1_s_at5/118+25385861..25392208transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6094.1.S1_x_at--105--8951Chr08:25362768..25362792 (25 bp)
TGCACTACGTCCACCACGAGTACGG
LOC_Os08g40270
OsAffx.6094.1.S1_x_at--971--3951Chr08:25362951..25362975 (25 bp)
CGGAGTACTCCGTCGGCCACAAGGC
LOC_Os08g40270
OsAffx.6094.1.S1_x_at--1111--4651Chr08:25363005..25363029 (25 bp)
GCGTGCTCGTGCTCGAGGTCGTCAC
LOC_Os08g40270
OsAffx.6094.1.S1_x_at--1044--9091Chr08:25363014..25363038 (25 bp)
TGCTCGAGGTCGTCACCGGCCGGCA
LOC_Os08g40270
OsAffx.6094.1.S1_x_at--179--4271Chr08:25363055..25363079 (25 bp)
CCGGCGTGCCCGATGCTGTCGGACT
LOC_Os08g40270
OsAffx.6094.1.S1_x_at--706--8711Chr08:25363071..25363248 (25 bp)
TGTCGGACTGGGTGCTGCAGATCCT
LOC_Os08g40270
OsAffx.6094.1.S1_x_at--703--1951Chr08:25363234..25363254 (21 bp)
ACTGGGTGCTGCAGATCCTGTCCGG
LOC_Os08g40270
OsAffx.6094.1.S1_x_at--179--9111Chr08:25363236..25363260 (25 bp)
TGCTGCAGATCCTGTCCGGGTCGGC
LOC_Os08g40270
OsAffx.6094.1.S1_x_at--387--1031Chr08:25363272..25363296 (25 bp)
AGGTGCCGCAGCTCAAGCCGTCGTT
LOC_Os08g40270
OsAffx.6094.1.S1_x_at--62--5071Chr08:25363279..25363303 (25 bp)
GCAGCTCAAGCCGTCGTTCGTGTGG
LOC_Os08g40270
OsAffx.6094.1.S1_x_at--187--2031Chr08:25363329..25363353 (25 bp)
ACTACGACCTGATCGACATCGGCGC
LOC_Os08g40270
Target Sequence 
TGCACTACGTCCACCACGAGTACGGCCCCATGGTGCTCCACCGCGACATCAAGGCCAGCAACGTCCTCCTCGACGCCTCC
TTCCGCGCGAGGCTCGGCGACTTCGGCCTCGCCCGCGTCCTCGACCTCGACCGCAGCTCCTTCACCGACCTCGGCGTCGC
CGGCACGCGCGGCTACATCGCGCCGGAGTACTCCGTCGGCCACAAGGCGACGCGCCAGACCGACGTGTTCGCGTTCGGCG
TGCTCGTGCTCGAGGTCGTCACCGGCCGGCACGCGCTGCTCGGCGACCCGGCGTGCCCGATGCTGTCGGACTGGGTGCTG
CAGATCCTGTCCGGGTCGGCGCCGCCGCCCGAGGTGCCGCAGCTCAAGCCGTCGTTCGTGTGGCCGCCGGATGGCGGCGC
CAGCGCGCACTACGACCTGATCGACATCGGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6094.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis