Browse Element(s) Details


Os.4610.1.A1_s_at

Description gb:AK104160.1
DB_XREF= gi:32989369
TID=Os.4610.1
CNT=33
FEA=FLmRNA
TIER=ConsEnd
STK=0
UG=Os.4610 (NCBI UniGene Cluster)
UG_TITLE=Manganese superoxide dismutase (rmsod1) mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-211-E09, full insert sequence.
FL= gb:AK104160.1 gb:AK119904.1 gb:AK070528.1 gb:AK104030.1 gb:L34039.1 gb:L34038.1 gb:L19436.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4026011/11SBP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40250OsAffx.6093.1.S1_at11/118+25328770..25335292expressed protein
LOC_Os08g40260Os.4610.1.A1_s_at11/118+25349618..25354614SBP domain containing protein, expressed
LOC_Os08g40260Os.10618.1.S1_s_at11/118+25349618..25354614SBP domain containing protein, expressed
LOC_Os08g40270OsAffx.6094.1.S1_x_at11/118+25360662..25363516Protein kinase domain containing protein
LOC_Os08g40280Os.56331.1.S1_at5/118+25365412..25368974Protein kinase domain containing protein, expressed
LOC_Os08g40290Os.46012.2.S1_x_at9/118+25372470..25376984retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40290Os.46012.3.S1_x_at6/118+25372470..25376984retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40290Os.27088.1.A1_x_at5/118+25372470..25376984retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40300NANA8+25379188..25385619expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4610.1.A1_s_at--728--5851Chr08:25350205..25350229 (25 bp)
GACCAACGCCAAGGATTATCACCGG
LOC_Os08g40260
Os.4610.1.A1_s_at--188--2331Chr08:25350236..25350260 (25 bp)
AAAGTCTGCGAGATCCACGGCAAGA
LOC_Os08g40260
Os.4610.1.A1_s_at--870--4571Chr08:25350292..25350315 (24 bp)
GCGCTTCTGTCAGCAGTGCAGTAGA
LOC_Os08g40260
Os.4610.1.A1_s_at--1059--1511Chr08:25350303..25350537 (25 bp)
AGCAGTGCAGTAGATTTCACCCGCT
LOC_Os08g40260
Os.4610.1.A1_s_at--522--191Chr08:25350526..25350550 (25 bp)
ATTTCACCCGCTCTCTGAGTTTGAT
LOC_Os08g40260
Os.4610.1.A1_s_at--265--5051Chr08:25350567..25350591 (25 bp)
GCAGACGTAGGCTCGCCGGTCACAA
LOC_Os08g40260
Os.4610.1.A1_s_at--321--5071Chr08:25350631..25350655 (25 bp)
GCAGCTGCTGCTACCTGGAAACCAG
LOC_Os08g40260
Os.4610.1.A1_s_at--439--3051Chr08:25350689..25350713 (25 bp)
AATCTGATCACGGTTATTGCACGCT
LOC_Os08g40260
Os.4610.1.A1_s_at--287--9031Chr08:25350706..25350816 (25 bp)
TGCACGCTTGCAAGGCAGTAATGTT
LOC_Os08g40260
Os.4610.1.A1_s_at--149--2991Chr08:25350811..25350835 (25 bp)
AATGTTGGTAAACTGCCCAGCATCC
LOC_Os08g40260
Os.4610.1.A1_s_at--68--4971Chr08:25350830..25350854 (25 bp)
GCATCCCTCCGATACCAGATAAAGA
LOC_Os08g40260
Target Sequence 
GACCAACGCCAAGGATTATCACCGGAGACACAAAGTCTGCGAGATCCACGGCAAGACCACGAAGGCGCTGGTTGGCAACC
AGATGCAGCGCTTCTGTCAGCAGTGCAGTAGATTTCACCCGCTCTCTGAGTTTGATGAGGGTAAGAGGAGCTGCAGACGT
AGGCTCGCCGGTCACAACAGGCGGCGAAGAAAAACCCAGCCAACAGATGTTCGTTCGCAGCTGCTGCTACCTGGAAACCA
GGAAAATGCAGCAAATAGGACACAGGATATTGTAAATCTGATCACGGTTATTGCACGCTTGCAAGGCAGTAATGTTGGTA
AACTGCCCAGCATCCCTCCGATACCAGATAAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4610.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis